Protein Model on 5zc9_A_1_B_1
(TEMPLATE: 
5zc9
)Protein Model on 5zc9_A_1_B_1
(TEMPLATE: 5zc9
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [378 aa] | Eukaryotic initiation factor 4A-I :IF4A1_HUMAN | |
| 2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*GP*AP*G)-3') | 294P 295S(T) 296R 325G 326G 329A(V) 346T 347P 348G 349R 352D 356T(R) 374G(E) 378Q(R) 379G 380Y(F) 383F(Q) 514R(N) 515T 516K(R) 546H 547G 554R 572T 573D 574V(L) (identity: 61.5 %/33.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5zc9_A_1 identity=33.9% |
queryA 249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347
: * * * * * * * ** * **** * * *** * * * ****:
5zc9_A_1 52:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 147
SecStr :HHHHTT EEEE TT-SSHHHHHHHHHHHH TTS S EEEE SSHHHHHHHHHHHHHHTTTTT EEE---E TTS HHHHHHHHHH SEEEE H:
ExpBur :ebbeeeebbbbbbebb-bebbbbbbbbbbebbeeeeebbbbbbbbbbebbbebbbebbeebbeebebebbb---bbbeeeeeebbeebeeeebbbbbbbb:
Contact : bbb bb b bb
queryA 348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447
:** * * ****** ** * * * * ** *** * ** * * * * * :
5zc9_A_1 148:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 240
SecStr :HHHHHHHHTTSS TT EEEETTHHHHTSTTTHHHHHHHHTTS TT ------EEEEEES H-HHHHHGGGT SS EEE GGG S TTEEEEEEE:
ExpBur :ebbeebbeeeebeeeebebbbbbbbbebbeeebeeebeebeeebeeeb------bbbbbbbbbbe-ebbeebeebbeebeebeeeeeebbbeebebbbbe:
Contact :bb b b b bbb b
queryA 448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547
:* ** * * * * * ** ** * * * * **:
5zc9_A_1 241:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG: 292
SecStr :E--------ES------------------------GGGH--HHHHHHTHHHHTTS-----EEEEE S HHHHHHHHHHH---------HHTT EEE T:
ExpBur :b--------ee------------------------eeeb--bebbbebbebbeeb-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbe:
Contact : bbb bb
queryA 548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
:* ** * * * ** ** ***** * *** ** ** ***** ** * * ** * * *** *:
5zc9_A_1 293:DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 385
SecStr :TS HHHHHHHHHHHHTTS EEEE GGGTSS TTEEEEEESS SSHHHHHHHHTTSSGGG EEEEEEEEHHHHHHHHHH-----HHHHT EE:
ExpBur :ebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbbeeebbbbbbbbbbbbeeeebbbbbbbbeebbeebeeb-----beebebebee:
Contact : b bbb
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[assembly_id:1]
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