Protein Model on 5suq_C_1_F_1 (TEMPLATE: 5suq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) C 1 (C) polymer(polypeptide(L)) [374 aa] ATP-dependent RNA helicase SUB2 :SUB2_YEAST
2 b F 1 (N) polymer(polypeptide(L)) [2230 aa] Tho2, Hpr1, Mft1, and Thp2 6E(D) 7M(F) 8G(L) 11P 12E 15Q(R) 30A(Q) 34P 38G(H) 393Q(R) 502K(D) 505K(E) 539Q(N) 541S(P) 564G(F) 567R (identity: 25.0 %/31.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5suq_C_1 identity=31.2%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   *   **    * ***  *  * ***  *     *                                         :
5suq_C_1      64:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 122
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHTTT  EEEE  TTSSSHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebbebbeebeeeebbebbeebbeebeeeebbbbbbeeeeebebbbbbbbbb-----------------------------------------:    
Contact         :  bbb  bb  b              b   b   b                                                                 

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
5suq_C_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
                :                                                                                    *           ****:
5suq_C_1     123:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 143
SecStr          :-------------------------------------------------------------------------------H    TT   EEEE SSHHHH:    
ExpBur          :-------------------------------------------------------------------------------ebeeeeebbbbbbbbeeeebb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
                : *  *    * **   *        **         * *      *** *****  **      ** *   * ** *  *         *    *   * :
5suq_C_1     144:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 238
SecStr          :HHHHHHHHHHTTT --TT  EEEE TTS HHHHHHHHH TTT  SEEEE HHHHHHHHTTTSS  TT  EEEEETHHHHHHSHH---HHHHHHHHHTTS :    
ExpBur          :eebeeebeebbeeb--eebebbbbebeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbebbebbeeee---beeebeebbeebe:    
Contact         :                                                                                                b   

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :  *  **   **** *             *                     *          *    *           *  *                 :
5suq_C_1     239:RDK--QVMMFSATL-SQEIRPICRRFLQNP-----------------LEIFVXXXXXXXXXGLQQYYIKLEE---REKNRKLA-----------------: 298
SecStr          :SSS--EEEEEES  - TTTHHHHHTT SS -----------------EEE  --------- EEEEEEE  G---GGHHHHHH-----------------:    
ExpBur          :eeb--bbbbbbeeb-eeebbeebeebbeee-----------------eebee---------eeebbbbebee---eebeebbe-----------------:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596
                :           * ***         *                 *     **  *  **      **    *    ***  *****      **  *  * :
5suq_C_1     299:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 387
SecStr          :--HHHHHS  SEEEEE SSHHHHHHHHHHH---------HHTT  EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS   TTEEEEEESS  SSH:    
ExpBur          :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebeeeeeeeeeebbeeeeeebbbbbeebbeeeebeebbbbbbbbbbeeb:    
Contact         :     b  b                                 b b                      b  b                             

queryA       597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :  * ** ** **    ***** *      :
5suq_C_1     388:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 416
SecStr          :HHHHHHHTTSSGGG  EEEEEEE SHHHH:    
ExpBur          :eebeebbebbbeeeeebbbbbbbbeeebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123