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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [383 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST | |
2 | b | D 1 (G) | polymer(polypeptide(L)) [17 aa] | RNA annealing protein YRA1 :YRA1_YEAST | 379G(L) 385N(R) 386R 389N(Q) 392P(F) 393Q(R) 395T 396S(P) 397D(R) 399K 421K(R) 422I(F) 424H(Q) (identity: 23.1 %/31.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5sup_B_1 identity=31.8% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * ** * *** * * *** * * : 5sup_B_1 8:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 66 SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTSSSHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeebeeeebbebbeebbeebeeeebbbbbbebbeebebbbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 5sup_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299 : * ****: 5sup_B_1 67:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 87 SecStr :-------------------------------------------------------------------------------H TT EEEE SSHHHH: ExpBur :-------------------------------------------------------------------------------ebeeeeeebbbbbbbbbebbb: queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396 : * * * ** * ** * * *** ***** ** ** * * ** * * * * * : 5sup_B_1 88:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 182 SecStr :HHHHHHHHHHTTT --TT EEEE TTS HHHHHHHHH TTT SEEEE HHHHHHHHHTTSS TT EEEEETHHHHHHSHH---HHHHHHHHHTTS : ExpBur :bbbeeebeebbeeb--eebebbbbbbeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beebbeebbeebe: Contact : b bb b bb bb queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : * ** **** * * * * * * * * * : 5sup_B_1 183:RDK--QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLEE---REKNRKLA-----------------: 242 SecStr :SSS--EEEEEES - TTTHHHHHTT SS --EEE SGGGGS TT---------------EEEEEEE G---GGHHHHHH-----------------: ExpBur :eeb--bbbbbbbbb-eeebbebbeebbeee--eeeebeeebebbbeb---------------bebbebebee---eebeeebe-----------------: Contact :b b bb b queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596 : * *** * * ** * ** ** * *** ***** ** * * : 5sup_B_1 243:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 331 SecStr :--HHHHHS SEEEEE SSHHHHHHHHHHH---------HHTT EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS S H: ExpBur :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbbbbbbbbeeb: queryA 597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : * ** ** ** ***** * : 5sup_B_1 332:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 360 SecStr :HHHHHHHTTSSTTT EEEEEEE SHHHH: ExpBur :bbbbbbbbbbbbeeeebbbbbbbeeeebe: |