CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [153 aa] | ATP-dependent RNA helicase vasa, isoform A :VASA1_DROME | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [92 aa] | Maternal effect protein oskar :OSKA_DROME | 496Y 499R 517I(R) 520D 521N(F) 523E(A) 524Q(S) 525Y(F) 527I(S) 528Q(E) 529Q(K) 539Q(E) 542C(T) 543V(T) 544C(S) 546H 547G 548D 549R 550K(L) 553E(Q) 554R 566V(M) (identity: 34.8 %/38.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5nt7_D_1 identity=38.2% |
queryA 494:GEYAVRA----IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN: 589 : ** * * * * * ** * * * **** * * * ** * ** * ** ** ** ***: 5nt7_D_1 13:NKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN: 103 SecStr : GGGHHHHHHHHHHH TTEEEEES HHHHHHHHHHHHHT---------T EEEE TTS HHHHHHHHHHHHHTS SEEEEETTTTTT SEEEE: ExpBur :eeeebeeebbebbeeebeebbbbbeeeeebeebbeebeee---------ebebbbbbeeeeeeeeeebbeebeeeeeebbbbbbebbeebebeebebbbb: Contact : b b b bb bbb bbb b bbb bbbbb bb b queryA 590:VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : * ******* * * * ** : 5nt7_D_1 104:YDMPSKIDDYVHRIGRTXXXXXXGRATSFFDPEKDR: 139 SecStr :SS SSHHHHHHHHTT ------ EEEEEE TTT G: ExpBur :bbbbeebebbeebbebb------eebbbbbbeeebe: |