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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | A 1 (B) | polymer(polypeptide(L)) [413 aa] | DEAD-box ATP-dependent RNA helicase CshA :A0A0K2H973_GEOSE |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5ivl_A_1 identity=37.5% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * * * * * * * *** *** * ** * ** *** ** ** * : 5ivl_A_1 4:FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV---------------------------------------: 64 SecStr : SS HHHHHHHHTTT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH ---------------------------------------: ExpBur :ebeeebeeebbebbeeeeeeebeebbeebbeebeeeebbbbbbebeeebbbbbbbbbbbeb---------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 5ivl_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPSREL: 298 : * ** * * ***: 5ivl_A_1 65:----------------------------------------------------------------------------------DVKNGAIQALVVAPTREL: 82 SecStr :---------------------------------------------------------------------------------- TT S EEEE SSHHH: ExpBur :----------------------------------------------------------------------------------eeeeebbbbbbbbbbbbb: queryA 299:AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398 :* * * * * ** * * ****** * * * * * ****** * * * * : 5ivl_A_1 83:AIQVSEELYKIGAV---KRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLXXGFIEDIEAILSHVP-----A: 174 SecStr :HHHHHHHHHHHTTT---TT EEEE TTS HHHHHHHHTT SEEEE HHHHHHHHHTTSS TT EEEE SGGGG -- HHHHHHHHHHHS -----S: ExpBur :bbbbbbbbeebbee---eebebbebbeebeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebe--eeeeebeebbeebe-----e: queryA 399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498 : * * *** * * * * * * * * * * * ** : 5ivl_A_1 175:ER-QTLLFSATMPD-PIRRIAERFMNEPELVKVKAXXXXVPNIQQYYLEVHEK--KKFDILT----RLLDIQA----------PEL--------------: 242 SecStr :SS-EEEEEESS H-HHHHHHHHH SS EEEE ---- TTEEEEEEE GG--GHHHHHH----HHHHHH ---------- SS--------------: ExpBur :eb-bbbbbbeeeee-ebeebbeebbeeeeebebee----eebbebbbbebeee--ebbebbb----ebbbbee----------beb--------------: queryA 499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN: 598 : ** * *** * * * *** * * ** * * ******* ** ** * * * : 5ivl_A_1 243:----------AIVFGRTKRRVDELAEALNLRG---------YAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPES: 323 SecStr :----------EEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTSSSEEEE GGGSS EEEESS SSHHH: ExpBur :----------bbbbbebbebbeebbeebeeee---------bebebbbeeeeeeebeebbeebeeeebebbbbbbbbbbebebeebbbbbbbbbbebbbb: queryA 599:YVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 :******* *** * * * * : 5ivl_A_1 324:YVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI: 355 SecStr :HHHHHTTSSGGG EEEEEEE GGGHHHHHHH: ExpBur :bebbbebbbeeeeebbbbbbbbeebbeebeeb: |