Protein Model on 5ivl_A_1 (TEMPLATE: 5ivl )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description
1 a A(DDX1_HUMAN) A 1 (B) polymer(polypeptide(L)) [413 aa] DEAD-box ATP-dependent RNA helicase CshA :A0A0K2H973_GEOSE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ivl_A_1 identity=37.5%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* * *   *   * * *     * ***  *** *   **   * ** *** ** **    *                                       :
5ivl_A_1       4:FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV---------------------------------------:  64
SecStr          :   SS  HHHHHHHHTTT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHHH ---------------------------------------:    
ExpBur          :ebeeebeeebbebbeeeeeeebeebbeebbeebeeeebbbbbbebeeebbbbbbbbbbbeb---------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
5ivl_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPSREL: 298
                :                                                                                       *  ** * * ***:
5ivl_A_1      65:----------------------------------------------------------------------------------DVKNGAIQALVVAPTREL:  82
SecStr          :---------------------------------------------------------------------------------- TT  S  EEEE SSHHH:    
ExpBur          :----------------------------------------------------------------------------------eeeeebbbbbbbbbbbbb:    

queryA       299:AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398
                :* *                 * * * **     *   *       ******  *    * * *  *   ******  *  *    *       *      :
5ivl_A_1      83:AIQVSEELYKIGAV---KRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLXXGFIEDIEAILSHVP-----A: 174
SecStr          :HHHHHHHHHHHTTT---TT  EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHTTSS  TT  EEEE SGGGG -- HHHHHHHHHHHS -----S:    
ExpBur          :bbbbbbbbeebbee---eebebbebbeebeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebe--eeeeebeebbeebe-----e:    

queryA       399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498
                : * *    ***          *  *  *  *  *               *  *       *     *  *  *          **               :
5ivl_A_1     175:ER-QTLLFSATMPD-PIRRIAERFMNEPELVKVKAXXXXVPNIQQYYLEVHEK--KKFDILT----RLLDIQA----------PEL--------------: 242
SecStr          :SS-EEEEEESS  H-HHHHHHHHH SS EEEE   ---- TTEEEEEEE  GG--GHHHHHH----HHHHHH ---------- SS--------------:    
ExpBur          :eb-bbbbbbeeeee-ebeebbeebbeeeeebebee----eebbebbbbebeee--ebbebbb----ebbbbee----------beb--------------:    

queryA       499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN: 598
                :          ** * ***   * *       *               ***     *   *  ** *    *  ******* ** **  * *   *     :
5ivl_A_1     243:----------AIVFGRTKRRVDELAEALNLRG---------YAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPES: 323
SecStr          :----------EEEE SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHTTSSSEEEE GGGSS        EEEESS  SSHHH:    
ExpBur          :----------bbbbbebbebbeebbeebeeee---------bebebbbeeeeeeebeebbeebeeeebebbbbbbbbbbebebeebbbbbbbbbbebbbb:    

queryA       599:YVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :******* ***   * *   *         * :
5ivl_A_1     324:YVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI: 355
SecStr          :HHHHHTTSSGGG  EEEEEEE GGGHHHHHHH:    
ExpBur          :bebbbebbbeeeeebbbbbbbbeebbeebeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123