[pdbjlvh2]Protein Model on 4w7s_B_1_G

Protein Model on 4w7s_B_1_G_1 (TEMPLATE: 4w7s )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [448 aa]	Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 :PRP28_YEAST
2	b		G 1 (A)	non-polymer(P6G)	HEXAETHYLENE GLYCOL	376L(I) 377S(D) 378Q(L) 379G 413F(V) (identity: 20.0 %/31.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4w7s_B_1 identity=31.7%

queryA         4:FSEMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR:  98
                :  *    *         *     ** **   **         * *  * ****** ** **                                       :
4w7s_B_1      49:WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNUKQYRDFLGVASTGSGKTLAFVIPIL-------------------------------------: 111
SecStr          :SSTT  S HHHHHHHHTTS   S  HHHHHHHHHH  TTT   EEEE  S TTHHHHHHHHHH-------------------------------------:    
ExpBur          :beeeebbeeebbebbeeebeeeebeebbbbbbbbbbbeeebbbbbbbbbeeeebbbbbbbbbb-------------------------------------:    

queryA        99:GSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI: 198
                :                                                                                                    :
4w7s_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       199:DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--------------: 284
                :                                                                                                    :
4w7s_B_1     112:--------------------------------------------------------------------------------------IKUSRSPPRPPSLK: 125
SecStr          :--------------------------------------------------------------------------------------HHHHTS    HHHH:    
ExpBur          :--------------------------------------------------------------------------------------bbeeeeeebeeeeb:    

queryA       285:--NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG: 379
                :    *****  * ***  *         *      *       * **         *  * ** * ***** *      *   **  *******     *:
4w7s_B_1     126:IIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVUKQVETLVLDEADKUIDLG: 225
SecStr          :HHH  SEEEE SSHHHHHHHHHHHHHHHHHHHHSSS    EEEE TTS HHHHHHHGGG  SEEEE HHHHHHHHHTT    TT  EEEE SHHHHHHTT:    
ExpBur          :eebbbbbbbbbbeeebbeebbeebeebbeebeeeeebebebbbbbeeeeeeebeeebeebbbbbbbbbebbeebbeeeebebebbebbbbbbbbebbeee:    
Contact         :                                                                                                bbbb

queryA       380:YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA: 479
                :  *                   *     **       *        *       *         **       *                          :
4w7s_B_1     226:FEDQVTNILTKVDINADSAVNRQTLUFTATUTPV-IEKIAAGYUQKPVYATIGVETGSEPLIQQVVEYADNDEDKF------------------------: 300
SecStr          : HHHHHHHHHHHHHHS TT   EEEEEESS  HH-HHHHHHHH SS EEEEES        EEEEEEE SSHHHHH------------------------:    
ExpBur          :eeeebbebbeebeeeeeeebeebbbbbbeeeeee-beebbeeebeebbebebeeeeeeeeebebbbebbeeeeebb------------------------:    
Contact         :                                 b                                                                  

queryA       480:NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :          *     *             ***   *   * *   *         *        **       *   *  *    *   * * ***** :
4w7s_B_1     301:-------KKLKPIVAKYD---------PPIIIFINYKQTADWLAEKF--------QKETNUKVTILHXXKSQEQREHSLQLFRTNKVQIUIATNVAARGL: 376
SecStr          :-------HHHHHHHTTS ---------S EEEE S HHHHHHHHHHH--------HHHSS  EEEE --   SSTHHHHHHHHTTSSSEEEE HHHHTT :    
ExpBur          :-------eebeeebeeee---------eebbbbbeeeebbeebbebb--------eeebeeebbebb--eebeeeeebbebbeeeebbbbbbbeebbeee:    

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :**  *  * *         * ***** ***   * * * *      :
4w7s_B_1     377:DIPNVSLVVNFQISKKUDDYIHRIGRTGRAANEGTAVSFVSAAEDE: 422
SecStr          :    BSEEEESS  SSHHHHHHHHTTBS TT  EEEEEEE SSS H:    
ExpBur          :ebeebebbbbbbbbeebeebeebbebbbeeeeebbbbbbbbeebee:

Protein Model on 4w7s_B_1_G_1 (TEMPLATE: 4w7s )

Input Residue Numbers for Focused Sites