Protein Model on 4tyy_B_1_D_1 (TEMPLATE: 4tyy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) B 1 (A) polymer(polypeptide(L)) [505 aa] ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST
2 b D 1 (A) non-polymer(CDP) CYTIDINE-5'-DIPHOSPHATE 22W(F) 24L(G) 26T 29Q 47E(K) 48T 49G 50S(T) 51G 52K 53T 54G(F) 580D 608R 609A(S) (identity: 60.0 %/36.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4tyy_B_1 identity=36.0%
queryA         1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD:  97
                :     * **   **  *   *     *  *   *  **   *  *   * ** *** ** **  *    *  * *                         :
4tyy_B_1      17:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------:  91
SecStr          :HHHHHHHTSS HHHHHHHHHTT SS  HHHHHHHHHHT SS EEEEEE  TTS HHHHHHHHHHHHHHTTSSSST-------------------------:    
ExpBur          :beebeeeeebeebbeebbeebeeeebeebbeebbeebbeeeebbbbbbbbbbbebbbbbbbbbbbbbbeeeeeee-------------------------:    
Contact         :                      b b b  b                   bbbbbbbb                                           

queryA        98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197
                :                                                                                                    :
4tyy_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294
                :                                                                                             ** ** *:
4tyy_B_1      92:------------------------------------------------------------------------------------------YMVKAVIVAP: 101
SecStr          :------------------------------------------------------------------------------------------TS  EEEE S:    
ExpBur          :------------------------------------------------------------------------------------------ebbbbbbbbb:    

queryA       295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385
                : * ** *     *       *  *         **    **      *     **  ***** *     *      **    ****** **  *  *   :
4tyy_B_1     102:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 195
SecStr          :SHHHHHHHHHHHHHHHHS-- GGGTTS EEEE TTS HHHHHHHHHHH  --SEEEE HHHHHHHHH--HHHHHHSSS  EEEEETHHHHTSTTTHHHHH:    
ExpBur          :bebbbbbbbebbeebbee--eeebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebbbbbbbbbbebbeeebeeebe:    

queryA       386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484
                :          *           ****    * **   **       *   *      *              **   *                ***   :
4tyy_B_1     196:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 271
SecStr          :HHHHHHHHH SS TT  EEEEEESS  T-HHHHHHTTT  SSEEEEEBSS SSS SS --------------TTEEEEEEEESSS---------THHHHH:    
ExpBur          :ebbebbbeebeeeeeebbbbbbbbbbee-ebbeebeebbebeebbbbbebeeeeebbb--------------ebbebbbbebbeb---------bbbbbb:    

queryA       485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :  * **          ***      ****  *       *  *   *                   **      *     ****     * **** *** :
4tyy_B_1     272:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 353
SecStr          :HHHHHH--------HHHHHHTS  EEEEE S HHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS :    
ExpBur          :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbbbbeebb----------eeebebbebbeeeebeebeebbeebeebebbbbbbbbbbbbbb:    

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                :*   *  *     * *  ** *****  *    *      :
4tyy_B_1     354:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 393
SecStr          :  TT  EEEEES  SSSTHHHHHGGGSS TT  EEEEEEE:    
ExpBur          :bbeebebbbbbbbbebebbbbbbbbbbbbeebebbbbbbb:    
Contact         :b                           bb

Input Residue Numbers for Focused Sites

ex) 2,15,123