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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (A) | polymer(polypeptide(L)) [509 aa] | ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST | |
2 | b | A 1 (B) | polymer(polydeoxyribonucleotide) [7 base] | DNA (5'-D(P*AP*AP*AP*AP*AP*AP*A)-3') | 294P 295S(T) 296R 325G 326G 346T 348G 349R 352D 374G(R) 377S(E) 380Y(F) 514R(P) 515T 546H 547G 554R 572T 573D 574V 594D(S) 595E 598N (identity: 73.9 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4tyn_B_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 4tyn_B_1 17:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 91 SecStr :HHHHHHTTSS HHHHHHHHTT SS HHHHHHHHHHHH SS EEEEE TTS TTHHHHHHHHHHHHHTTTSST-------------------------: ExpBur :beebeeeeebeeebbbbbeebeeeebeebbebbbbbbbeeeebbbbbbbbbbbebbbbbbbbbbbbbbeeeeeee-------------------------: queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 4tyn_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 4tyn_B_1 92:------------------------------------------------------------------------------------------YMVKAVIVAP: 101 SecStr :------------------------------------------------------------------------------------------TS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: Contact : b queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 4tyn_B_1 102:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 195 SecStr :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeebebbeebeeeeb--bbbbbbbebbbebbe--eebeebbebbbbbbbbbbbebbeeebbeebe: Contact :bb bb b bb b b b b queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 4tyn_B_1 196:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 271 SecStr :HHHHHHHHH SS TT EEEEEESS S-HHHHHHTTT SSEEEEEESS SSS SS --------------TTEEEEEEEESST---------THHHHH: ExpBur :ebbebbbebbeeeeeebbbbbbbbbbee-ebbeebeebbebeebbbbbbbeeeeebbb--------------eebebbbbbbeeb---------bbbbbb: queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 4tyn_B_1 272:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 353 SecStr :HHHHHH--------HHHHHHTT EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS : ExpBur :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbbbbeebb----------eeebbbbebbeeeebebbeebbeebeebebbbbbbbbbbbbbb: Contact : bbbb bb b bbb queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 4tyn_B_1 354:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 393 SecStr : TT EEEEES SSSHHHHHHGGGSSGGG EEEEEEE: ExpBur :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebbbbbbb: Contact : bb b |