Protein Model on 4lk2_A_1_C_1 (TEMPLATE: 4lk2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [444 aa] Pre-mRNA-processing ATP-dependent RNA helicase PRP5 :PRP5_YEAST
2 b C 1 (A) non-polymer(NI) NICKEL (II) ION 449N(H) (identity: 0.0 %/30.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4lk2_A_1 identity=30.5%
queryA        26:TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT: 125
                :* **    * *  * **     ******     *    *                                                             :
4lk2_A_1      75:TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV-------------------------------------------------------------: 113
SecStr          : HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHH-------------------------------------------------------------:    
ExpBur          :ebbbbbbbbbbbbbebbbbbbeeebebbbbbbbbbbebb-------------------------------------------------------------:    

queryA       126:KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ: 225
                :                                                                                                    :
4lk2_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       226:ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------------PKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                         *  **  * **** *       *    :
4lk2_A_1     114:-------------------------------------------------------------KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEA-: 151
SecStr          :-------------------------------------------------------------HHS    TT    SEEEE SSHHHHHHHHHHHHHHHTT-:    
ExpBur          :-------------------------------------------------------------eebeebeeeebbbbbbbbbbbeebbeebbeebbebbee-:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL----QVIVC: 406
                :     *     **     *   *  *  *** ****  *      ** *      * * **** *   *            ** *   *      *    :
4lk2_A_1     152:-DTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRPDKQCVLF: 240
SecStr          :- TT  EEEE SSS HHHHHHHHHT  SEEEE HHHHHHHHHHHHHTS  STT  EEEESSHHHHHHTT H----------HHHHHHHHSS TTSEEEEE:    
ExpBur          :-eeebebbbbbeeeeeeebeeebeebbbbbbbbbebbbebbeeeeeebbebebbbbbbbbbbbebbeeebe----------eebeebbeebbeebbbbbb:    

queryA       407:SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM: 506
                :***              * *          *   *                     * *                      *                  :
4lk2_A_1     241:SATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFXXXXXXXXXXXXXXXXXDA------------------: 321
SecStr          :ES   H-HHHHHHHHH SS EEEEESSS SS TTSEEEEEEESSHHHHHHHHHHHHHHGGGG -----------------  ------------------:    
ExpBur          :bbeeee-ebeebbeebbeeebebebeeeebbeeebebebebbeeeeebbebbbebbeebeeee-----------------eb------------------:    
Contact         :                                          b                                                         

queryA       507:DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV: 606
                :  ****      **         *               *      **  *** **      * ** *  **     *  **          ***  ** :
4lk2_A_1     322:-KAIIFVSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRT: 411
SecStr          :- EEEEES HHHHHHHHHHHHHTT---------   EEE TTS HHHHHHHHHHHHHSTT EEEEEGGGTTT  S   SEEEESS  SSHHHHHHHHTTT:    
ExpBur          :-bbbbbbeeeeebeebeeebeeee---------bebbbbbeebeeeeeeeebeebeeeeebbbbbbbeebeebebeebebbbbbbbbeebbbbeebbebb:    

queryA       607:GRAERMGLAISLV: 619
                : *  * * ** * :
4lk2_A_1     412:ARGSRSGTAITLL: 424
SecStr          :  GGG  EEEEEE:    
ExpBur          :eeeeebbbbbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123