Protein Model on 4brw_A_1_B_1
(TEMPLATE: 
4brw
)Protein Model on 4brw_A_1_B_1
(TEMPLATE: 4brw
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [376 aa] | ATP-DEPENDENT RNA HELICASE DHH1 :DHH1_YEAST | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [30 aa] | DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1 :PAT1_YEAST | 446V 448V(E) 449N(R) 450P(Q) 452T(L) 453D(H) 454R(C) 456W(N) 457E(T) 460G(S) 461K 514R(N) 515T(S) 517I(N) 518D(R) 520D(E) 521N(L) 522L 524Q(K) 525Y(K) 529Q(L) 544C(Y) 590V(F) 591T(D) (identity: 12.5 %/35.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4brw_A_1 identity=35.5% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
: * * * * ** * ** * * * * * *** ** ** * * * :
4brw_A_1 2:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------: 71
SecStr : GGGS HHHHHHHHHTT S HHHHHHHHHHHHT EEEE HHHHHHHHHHHHHH TTS S ------------------------------:
ExpBur :ebeebebeeebeebbeeeeeeebeebbeebbebbeeeebbebbbebeeebbbbbbbbbbeebeeeeeebb------------------------------:
queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
: :
4brw_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
: * *** * **** **:
4brw_A_1 68:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT: 85
SecStr :---------------------------------------------------------------------------------- S EEEE SSHHHHHHH:
ExpBur :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb:
queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
: * ** ** * * * ****** ** * ** **** ** * * *:
4brw_A_1 86:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 176
SecStr :HHHHHHHTTTTT--- EEEE SSS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEETTGGGGSSHHHHHHHHHHHTTS SS ------E:
ExpBur :bebbeebbeebe---bebbbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbeebbeeeeeeebeebbeebeeeb------b:
queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501
: *** * * * * * * * * * * * * :
4brw_A_1 177:SLLFSATF-PLTVDEFMDKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI-------------------------------------: 238
SecStr :EEEEESS - S HHHHHHH S EEEE S S B TTEEEEEEE GGGHHHHHHHHHHHS -------------------------------------:
ExpBur :bbbbbbbb-bbebeebbeebbeeeeebeebeebbbeebebbebebeeeebeebbeebbeebeb-------------------------------------:
Contact : b bbb bbb bb bb
queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601
: ****** * * ** * * ** * * ** * * * ***** * *** * * *:
4brw_A_1 239:-----NQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH: 324
SecStr :-----SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTSSSEEEE SS TTEEEEEESS SSHHHHHH:
ExpBur :-----ebbbbbbeeeeebeebbeebeeee---------eebeebbeebeeeeeeebeeebeeeebebbbbbeeeeeeeebeebbbbbbbbbbeebeebbe:
Contact : bb bb bbb bb b b bb
queryA 602:RIGRVGRAERMGLAISLV: 619
:**** ** **** * :
4brw_A_1 325:RIGRSGRFGHLGLAINLI: 342
SecStr :HH BS SS EEEEEEE:
ExpBur :bbbbeeeeebebbbbbbb:
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[assembly_id:1]
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