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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [508 aa] | ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST | |
2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | 294P 295S(T) 296R 325G 326G 346T 347P 348G 349R 352D 374G(R) 380Y(F) 514R(P) 515T 546H 547G 554R 572T 573D 574V (identity: 80.0 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3sqw_A_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 3sqw_A_1 19:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 93 SecStr :HHHHHHTTSS HHHHHHHHTTT SS HHHHHHHHHHH SSSEEEEEE TTS HHHHHHHHHHHHHHHTTTSST-------------------------: ExpBur :beebeeeebbeeebbebbeebeeeebeebbebbbeebbbeeebbbbbbbbbbbebbbbbbbbbbbbbbebeeeee-------------------------: queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 3sqw_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 3sqw_A_1 94:------------------------------------------------------------------------------------------YMVKAVIVAP: 103 SecStr :------------------------------------------------------------------------------------------TS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: Contact : b queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 3sqw_A_1 104:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 197 SecStr :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe: Contact :bb bb bbbb b b b queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 3sqw_A_1 198:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 273 SecStr :HHHHHHHHH SS TT EEEEEESS T-HHHHHTTTT SSEEEEEESS SSS SS --------------TTEEEEEEEESST---------THHHHH: ExpBur :ebbebbbeebeeeeebbbbbbbbbbbee-ebbeebeebbebeebbbbbbbeeeeebbb--------------eebebbbbbbeeb---------bbbbbb: queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 3sqw_A_1 274:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 355 SecStr :HHHHHH--------HHHHHTTT EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS : ExpBur :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeebebbbbbbbbbbbbbb: Contact : bbbb bb b bbb queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 3sqw_A_1 356:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 395 SecStr : TT EEEEES SSTTHHHHHHTTSS TT EEEEEEE: ExpBur :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebebbbbb: |