Protein Model on 3sqw_A_1_B_1 (TEMPLATE: 3sqw )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [508 aa] ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST
2 b B 1 (B) polymer(polyribonucleotide) RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') 294P 295S(T) 296R 325G 326G 346T 347P 348G 349R 352D 374G(R) 380Y(F) 514R(P) 515T 546H 547G 554R 572T 573D 574V (identity: 80.0 %/36.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3sqw_A_1 identity=36.0%
queryA         1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD:  97
                :     * **   **  *   *     *  *   *  **   *  *   * ** *** ** **  *    *  * *                         :
3sqw_A_1      19:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------:  93
SecStr          :HHHHHHTTSS HHHHHHHHTTT SS  HHHHHHHHHHH SSSEEEEEE  TTS HHHHHHHHHHHHHHHTTTSST-------------------------:    
ExpBur          :beebeeeebbeeebbebbeebeeeebeebbebbbeebbbeeebbbbbbbbbbbebbbbbbbbbbbbbbebeeeee-------------------------:    

queryA        98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197
                :                                                                                                    :
3sqw_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294
                :                                                                                             ** ** *:
3sqw_A_1      94:------------------------------------------------------------------------------------------YMVKAVIVAP: 103
SecStr          :------------------------------------------------------------------------------------------TS  EEEE S:    
ExpBur          :------------------------------------------------------------------------------------------ebbbbbbbbb:    
Contact         :                                                                                                   b

queryA       295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385
                : * ** *     *       *  *         **    **      *     **  ***** *     *      **    ****** **  *  *   :
3sqw_A_1     104:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 197
SecStr          :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH  --SEEEE HHHHHHHHH--HHHHHH TT  EEEEETHHHHTSTTTHHHHH:    
ExpBur          :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe:    
Contact         :bb                               bb                      bbbb  b                        b     b     

queryA       386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484
                :          *           ****    * **   **       *   *      *              **   *                ***   :
3sqw_A_1     198:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 273
SecStr          :HHHHHHHHH SS TT  EEEEEESS  T-HHHHHTTTT  SSEEEEEESS SSS SS --------------TTEEEEEEEESST---------THHHHH:    
ExpBur          :ebbebbbeebeeeeebbbbbbbbbbbee-ebbeebeebbebeebbbbbbbeeeeebbb--------------eebebbbbbbeeb---------bbbbbb:    

queryA       485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :  * **          ***      ****  *       *  *   *                   **      *     ****     * **** *** :
3sqw_A_1     274:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 355
SecStr          :HHHHHH--------HHHHHTTT  EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS :    
ExpBur          :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeebebbbbbbbbbbbbbb:    
Contact         :                              bbbb                                bb      b                 bbb     

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                :*   *  *     * *  ** *****  *    *      :
3sqw_A_1     356:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 395
SecStr          :  TT  EEEEES  SSTTHHHHHHTTSS TT  EEEEEEE:    
ExpBur          :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebebbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123