CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [509 aa] | ATP-dependent RNA helicase MSS116 :MS116_YEAST | |
2 | b | D 1 (A) | non-polymer(ALF) | TETRAFLUOROALUMINATE ION | 48T 49G 52K 371E 408A 578G 605R 608R (identity: 100.0 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3i62_A_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 3i62_A_1 70:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 144 SecStr :HHHHHHTTSS HHHHHHHHTT SS HHHHHHHHHHHSSSSEEEEEE TTS HHHHHHHHHHHHHHHTTTSST-------------------------: ExpBur :beebeeeebbeeebbebbeebeeeebeebbebbbeebbeeeebbbbbbbbbbbebebbbbbbbbbbbbebeeeee-------------------------: Contact : bb b queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 3i62_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 3i62_A_1 145:------------------------------------------------------------------------------------------YMVKAVIVAP: 154 SecStr :------------------------------------------------------------------------------------------TS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 3i62_A_1 155:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 248 SecStr :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe: Contact : b queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 3i62_A_1 249:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 324 SecStr :HHHHHHHHH SS TT EEEEEESS T-HHHHHTGGG SSEEEEEESS SSS SS --------------TTEEEEEEEESST---------THHHHH: ExpBur :ebbebbbeebeeeeebbbbbbbbbbbee-ebbeebeebbebeebbbbbbbeeeeebbb--------------eebebbbbbbeeb---------bbbbbb: Contact : b queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 3i62_A_1 325:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 406 SecStr :HHHHHH--------HHHHHTTT EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS : ExpBur :bbebbe--------ebbeeeeeebbbbbbbebeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeeeebbbbbbbbbbbbbb: Contact : b queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 3i62_A_1 407:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 446 SecStr : TT EEEEES SSTHHHHHHHTTSS TT EEEEEEE: ExpBur :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebebbbbb: Contact : b b |