Protein Model on 3i61_A_1_E_1 (TEMPLATE: 3i61 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [509 aa] ATP-dependent RNA helicase MSS116 :MS116_YEAST
2 b E 1 (A) non-polymer(MG) MAGNESIUM ION 53T 370D 371E (identity: 100.0 %/36.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3i61_A_1 identity=36.0%
queryA         1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD:  97
                :     * **   **  *   *     *  *   *  **   *  *   * ** *** ** **  *    *  * *                         :
3i61_A_1      70:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 144
SecStr          :HHHHHHHTSS HHHHHHHHTT  SS  HHHHHHHHHHH SSSEEEEEE  TTS HHHHHHHHHHHHHHHTTTSST-------------------------:    
ExpBur          :beebeeeebbeeebbebbeebeeeebeebbeebbeebbeeeebbbbbbbbbbbebbbbbbbbbbbbbbebeeeee-------------------------:    
Contact         :                                                       b                                            

queryA        98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197
                :                                                                                                    :
3i61_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294
                :                                                                                             ** ** *:
3i61_A_1     145:------------------------------------------------------------------------------------------YMVKAVIVAP: 154
SecStr          :------------------------------------------------------------------------------------------TS  EEEE S:    
ExpBur          :------------------------------------------------------------------------------------------ebbbbbbbbb:    

queryA       295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385
                : * ** *     *       *  *         **    **      *     **  ***** *     *      **    ****** **  *  *   :
3i61_A_1     155:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 248
SecStr          :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH  --SEEEE HHHHHHHHH--HHHHHH TT  EEEEETHHHHTSTTTHHHHH:    
ExpBur          :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe:    
Contact         :                                                                                    bb              

queryA       386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484
                :          *           ****    * **   **       *   *      *              **   *                ***   :
3i61_A_1     249:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 324
SecStr          :HHHHHHHHH SS TT  EEEEEESS  T-HHHHHHTTT  SSEEEEEESS TTS SS --------------TTEEEEEEEESST---------THHHHH:    
ExpBur          :ebbebbbeebeeeeebbbbbbbbbbbee-ebeeebeebbebebbbbbbbbeeebebbb--------------eebebebbbbeeb---------bbbbbb:    

queryA       485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :  * **          ***      ****  *       *  *   *                   **      *     ****     * **** *** :
3i61_A_1     325:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 406
SecStr          :HHHHHH--------HHHHHTTT  EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS :    
ExpBur          :bbebbe--------ebbeeeeeebbbbbbbebeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeeeebbbbbbbbbbbbbb:    

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                :*   *  *     * *  ** *****  *    *      :
3i61_A_1     407:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 446
SecStr          :  TT  EEEEES  SSTTHHHHHHTTSS TT  EEEEEEE:    
ExpBur          :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebebbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123