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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | F 1 (F) | polymer(polypeptide(L)) [271 aa] | Eukaryotic initiation factor 4A-I :IF4A1_HUMAN | |
2 | b | E 1 (E) | polymer(polypeptide(L)) [282 aa] | Programmed cell death protein 4 :PDCD4_HUMAN | 296R 297E 325G 329A(V) 346T 348G 349R 352D 377S 378Q(R) 379G 380Y(F) 514R(N) 515T 516K(R) 517I(R) 523E(T) 524Q(E) 536K(H) 537G(A) 573D 574V(L) 594D(T) 595E(N) 598N (identity: 48.0 %/35.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2zu6_F_1 identity=35.3% |
queryA 286:APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI: 384 :* ** * **** * * *** * * * ****** * * ****** ** * * *: 2zu6_F_1 82:ATQALVLAPTRELAQQIQKVVMALG---DXXXXXCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI: 178 SecStr :S EEEE SSHHHHHHHHHHHHTS --- ----- B SS SHHHHHHHHTT SSEEE HHHHHHHHHTTSS STT EEEE SHHHHHTTT HHHH: ExpBur :ebbbbbbbbeeeebeebeeebeeee---e-----bbbbeeeeeeeebbeebeeebbebbbbbbeebeebbeeeebeeeebebbbbeebbebbeeebeeeb: Contact : bb b b b bb b bbbb queryA 385:NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * ** *** * ** * * * : 2zu6_F_1 179:YDIFQKLNSNT------QVXLLSATMPS-DVLEVTKKFMRDP----------------------------------------------------------: 213 SecStr :HHHHTTS S ------B - S H-HHHHHHHHH S ----------------------------------------------------------: ExpBur :bebeeebeeeb------ee-eeeeeeee-ebeebeeebeeee----------------------------------------------------------: queryA 485:WSEAIKILKGEYAVRAIKEHKMD------------------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC: 542 : ** ** * * * * : 2zu6_F_1 214:-----------------------XXXXXXXXXXXXXGIRQFYINVXXEEWKLDTLCDLYETXTIXQAVIFINTRRKVDWLTEKM---------HARDFTV: 281 SecStr :------------------------------------ EEEEEE -- THHHHHHHHHTT - - EEE SSHHHHHHHHHHH---------HTTT : ExpBur :------------------------------------eeebeebeb--eeebbebbbeeeee-ee-ebbbbbeeeeebeebeeeb---------eeeebeb: Contact : bbbb bb bb queryA 543:VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR: 642 : * ** * * * ** ** ***** * *** ** ** *** * ** * * *** : 2zu6_F_1 282:SAMHXXXXQKERDVIMREFRXGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIXXXXXXXXXGVAINMVTEEDKXXXRDI-----ETFYNTX: 376 SecStr :EEE ---- TTTTTTHHHH - S EEE SGGGTT SS S EEESS SSHHHHHHH --------- EEEEEE TTT --- S-----TTT -: ExpBur :eebe----eeeeeebbeebe-eebebbbbbeebeeeeeeeebebbbbbbeeeeeeebeebe---------eebbbbbbeeee---eee-----eeebee-: Contact : bb bb b queryA 643:LKE: 645 : *: 2zu6_F_1 377:IEE: 379 SecStr : EE: ExpBur :bee: |