Protein Model on 2zu6_F_1_E_1 (TEMPLATE: 2zu6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) F 1 (F) polymer(polypeptide(L)) [271 aa] Eukaryotic initiation factor 4A-I :IF4A1_HUMAN
2 b E 1 (E) polymer(polypeptide(L)) [282 aa] Programmed cell death protein 4 :PDCD4_HUMAN 296R 297E 325G 329A(V) 346T 348G 349R 352D 377S 378Q(R) 379G 380Y(F) 514R(N) 515T 516K(R) 517I(R) 523E(T) 524Q(E) 536K(H) 537G(A) 573D 574V(L) 594D(T) 595E(N) 598N (identity: 48.0 %/35.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2zu6_F_1 identity=35.3%
queryA       286:APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI: 384
                :*  **   * **** *            *         ***   *     *      * ******  *      *        ******  ** *  * *:
2zu6_F_1      82:ATQALVLAPTRELAQQIQKVVMALG---DXXXXXCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI: 178
SecStr          :S  EEEE SSHHHHHHHHHHHHTS --- -----  B   SS SHHHHHHHHTT  SSEEE HHHHHHHHHTTSS STT  EEEE SHHHHHTTT HHHH:    
ExpBur          :ebbbbbbbbeeeebeebeeebeeee---e-----bbbbeeeeeeeebbeebeeebbebbbbbbeebeebbeeeebeeeebebbbbeebbebbeeebeeeb:    
Contact         :          bb                           b   b                 b bb  b                        bbbb    

queryA       385:NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484
                :          *      **   ***  * **     * *  *                                                          :
2zu6_F_1     179:YDIFQKLNSNT------QVXLLSATMPS-DVLEVTKKFMRDP----------------------------------------------------------: 213
SecStr          :HHHHTTS S  ------B -   S   H-HHHHHHHHH S  ----------------------------------------------------------:    
ExpBur          :bebeeebeeeb------ee-eeeeeeee-ebeebeeebeeee----------------------------------------------------------:    

queryA       485:WSEAIKILKGEYAVRAIKEHKMD------------------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC: 542
                :                                                                 ** **  *    * *                 *  :
2zu6_F_1     214:-----------------------XXXXXXXXXXXXXGIRQFYINVXXEEWKLDTLCDLYETXTIXQAVIFINTRRKVDWLTEKM---------HARDFTV: 281
SecStr          :------------------------------------  EEEEEE -- THHHHHHHHHTT -  -  EEE SSHHHHHHHHHHH---------HTTT   :    
ExpBur          :------------------------------------eeebeebeb--eeebbebbbeeeee-ee-ebbbbbeeeeebeebeeeb---------eeeebeb:    
Contact         :                                                                       bbbb     bb           bb     

queryA       543:VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR: 642
                :   *      **      *  *  * ** **  *****   *  ***  **    ** ***         * **  *  *                *** :
2zu6_F_1     282:SAMHXXXXQKERDVIMREFRXGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIXXXXXXXXXGVAINMVTEEDKXXXRDI-----ETFYNTX: 376
SecStr          :EEE ---- TTTTTTHHHH -  S  EEE SGGGTT   SS S EEESS  SSHHHHHHH --------- EEEEEE TTT ---  S-----TTT   -:    
ExpBur          :eebe----eeeeeebbeebe-eebebbbbbeebeeeeeeeebebbbbbbeeeeeeebeebe---------eebbbbbbeeee---eee-----eeebee-:    
Contact         :                              bb                   bb  b                                            

queryA       643:LKE: 645
                :  *:
2zu6_F_1     377:IEE: 379
SecStr          : EE:    
ExpBur          :bee:    


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