Protein Model on 2j0s_A_1_E_1
(TEMPLATE: 
2j0s
)Protein Model on 2j0s_A_1_E_1
(TEMPLATE: 2j0s
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN | |
| 2 | b | E 1 (T) | polymer(polypeptide(L)) [44 aa] | PROTEIN CASC3 :CASC3_HUMAN | 357G(R) 359L 360N(R) 361L(T) 362S(R) 381S(K) 384I 385N(Y) 388H(Y) 389N(R) 390Q(Y) 391I(L) 392P 393Q(P) 420E(N) 421K 422I(F) 423M 458R 483E 484M(E) 486S(K) 514R(N) 515T 517I(R) 518D(K) 521N(W) 591T(D) 593P 594D(N) 595E(N) 620A(K) 623K(D) 625K(R) 626V(I) 629H(D) (identity: 25.0 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2j0s_A_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
: * ** * ** * * * ** * *** *** * * :
2j0s_A_1 38:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 97
SecStr :SGGGG HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH----------------------------------------:
ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbe----------------------------------------:
queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
: :
2j0s_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
: *** :
2j0s_A_1 98:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 112
SecStr :-------------------------------------------------------------------------------------T TTS S EEEE :
ExpBur :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb:
Contact : b
queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
:* **** * * *** * * * ***** * * ******* * * * * :
2j0s_A_1 113:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 209
SecStr :SSHHHHHHHHHHHHHHTTTTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS TT EEEEETHHHHTSTTTHHHHHHHHTTS T:
ExpBur :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbbbbeeebbebebbebbbbbbbbebbeeebeeebeebeeebee:
Contact : b bbbb b bb bbbbbb
queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
: * ** **** * * * * * * ** * * * :
2j0s_A_1 210:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 268
SecStr :T ------EEEEEES - HHHHTTGGGT SS EEE GGG S TTEEEEEEEE--------SS------------------------TTHH--HHHHH:
ExpBur :eb------bbbbbbbbb-beebbeebeebbeebbebebeeeebeeeebebbbbeb--------ee------------------------eeeb--bebbb:
Contact : bbbb b bb b
queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
: * * ** *** ** * * * *** ** * * * ** *** *** * * ** **:
2j0s_A_1 269:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 354
SecStr :HHHHHHTSS-----EEEEE SSHHHHHHHHHHH---------HHTT EEE TTS HHHHHHHHHHHHHTSS EEEE GGGSSS TTEEEEEESS :
ExpBur :ebbeebeee-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb:
Contact : bb bb b b b
queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
: * ***** ** * * ** * * * *:
2j0s_A_1 355:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 401
SecStr :SSHHHHHHHHTTSSGGG EEEEEEEEGGGHHHHHHH-----HHHTT EE:
ExpBur :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee:
Contact :bb b b bb b
|
[assembly_id:1]
[help]