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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [390 aa] | ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN | |
2 | b | H 1 (H) | polymer(polyribonucleotide) | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | 294P 295S(T) 296R 324I 325G 326G 346T 347P 348G 349R 352D 355S(R) 380Y(F) 383F(Q) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 75.0 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2j0q_B_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 2j0q_B_1 38:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 97 SecStr :SSGGG HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbe----------------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 2j0q_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 2j0q_B_1 98:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 112 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 2j0q_B_1 113:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 209 SecStr :SSHHHHHHHHHHHHHHGGGTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS S EEEEESHHHHTSTTTHHHHHHHHHHS S: ExpBur :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbbbbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee: Contact :bbb bbb bbbb b b b b queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 2j0q_B_1 210:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 268 SecStr :S ------EEEEEES - HHHHHHGGGT SS EEE TTT S SSEEEEEEE --------SS------------------------TTHH--HHHHH: ExpBur :eb------bbbbbbbbb-eeebbebbeebbeebbbbbbeeeebbeeebebbbbeb--------ee------------------------eeeb--bebbb: queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** *** * * ** **: 2j0q_B_1 269:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 354 SecStr :HHHHHHTTS-----EEEEE S HHHHHHHHHHH---------HHTT EEE TTS HHHHHHHHHHHHHTSS EEEE GGGSSS TTEEEEEESS : ExpBur :ebbebbeee-----bbbbbbeeeebbeebbeeb---------eeeebebbbbbeebebeebeebbeebeebebebbbbbebbbbbbebeebbbbbbbbbb: Contact : bbb bb b bbb queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 2j0q_B_1 355:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 401 SecStr :SSHHHHHHHHTTSSTTS EEEEEEE GGGHHHHHHH-----HHHTT EE: ExpBur :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee: Contact :b |