Protein Model on 2hyi_I_1_B_1 (TEMPLATE: 2hyi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) I 1 (I) polymer(polypeptide(L)) [392 aa] Probable ATP-dependent RNA helicase DDX48 :DDX48_HUMAN
2 b B 1 (L) polymer(polyribonucleotide) 5'-R(*UP*UP*UP*UP*UP*U)-3' 294P 295S(T) 296R 325G 326G 329A(V) 346T 347P 348G 349R 352D 380Y(F) 383F(Q) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 73.9 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2hyi_I_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
2hyi_I_1      39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  98
SecStr          :SGGGS   HHHHHHHHHHT  S  TTHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbb----------------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
2hyi_I_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
2hyi_I_1      99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebebeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
2hyi_I_1     114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHTSTTTHHHHHHHHTTS T:    
ExpBur          :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbebbbeeebbebebbebbbbbbbbebbeeebeeebeebeeebee:    
Contact         :bbb                            bb  b                bbbb  b                           b  b          

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
2hyi_I_1     211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269
SecStr          :T ------EEEEEES  - HHHHHTGGGT SS EEE   GGG S TTEEEEEEEE--------SS------------------------THHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbebbeebbeebbebbbeeeebbeeebebbbeeb--------ee------------------------beeb--beebb:    

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
2hyi_I_1     270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355
SecStr          :HHHHHHTTS----- EEEE S HHHHHHHHHHH---------HHTT   EEE TTS HHHHHHHHHHHHHTSS EEEE GGGTSS   TT  EEEESS  :    
ExpBur          :ebbebbbeb-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb:    
Contact         :                    bbb                             bb      b                 bbb                   

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
2hyi_I_1     356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402
SecStr          :SSHHHHHHHHTTSSGGG  EEEEEEEETTHHHHHHHH-----HHHTT  EEE:    
ExpBur          :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee:    
Contact         :b                                                                                                   


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