Protein Model on 2db3_H_1_P_1 (TEMPLATE: 2db3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) H 1 (D) polymer(polypeptide(L)) [420 aa] ATP-dependent RNA helicase vasa :VASA_DROME
2 b P 1 (D) non-polymer(ANP) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 371E 408A 578G 580D 605R 608R 609A(V) (identity: 85.7 %/33.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2db3_H_1 identity=33.8%
queryA       287:PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR: 386
                :*   ** * **** *  *      *      *      **   * *      *   *  ***** * *          ** ******  *  * *    *:
2db3_H_1     130:PQVVIVSPTRELAIQIFN---EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRR: 226
SecStr          : SEEEE SSHHHHHHHHH---HHHHHTTTSS  EEEE SSS HHHHHHHHHT  SEEEE HHHHHHHHHHTSS  TT  EEEEETHHHHTSHHHHHHHHH:    
ExpBur          :bbbbbbbbbebbbbbbbe---bbbbbbbeeebebbbbbbebebebbbeebeebbbbbbbbbebbbebbeeeebbbeebbbbbbbbbbebbeeeeeeebee:    
Contact         :                                                                                    b               

queryA       387:MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS: 486
                :               *    ***                   *           *      **    *                               *:
2db3_H_1     227:IMTHVTMRPEH----QTLMFSATFPE-EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR-------------------------------S: 290
SecStr          :HHT TTS SS ----EEEEEES   H-HHHHHHGGG SS EEEEESSTT   TTEEEEEEE  GGGHH-------------------------------H:    
ExpBur          :bbeeebbeeee----bbbbbbbbbee-ebbeebeebbeeebbbbbeeebebbebbebebeebeeeebe-------------------------------e:    
Contact         :                     b                                                                              

queryA       487:EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY: 586
                :  * **              *  * *  **   * *                 *     ****    * * *  ** *    ** * ** ** **     :
2db3_H_1     291:KLIEILS----------EQADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH: 371
SecStr          :HHHHHHH----------H  TTEEEE S HHHHHHHHHHHHTT---------T  EEEE TTS HHHHHHHHHHHHTTS  EEEE GGGSSS   TT  E:    
ExpBur          :bbbebbe----------eebebbbbbbeeeeebeebbebbeee---------ebebbbbbeeeebeebbebbebbeeeeeebbbbbebbbbbbebeebeb:    
Contact         :                                                                                           b b      

queryA       587:VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :***   *     ******* **    * * *    **  :
2db3_H_1     372:VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR: 410
SecStr          :EEESS  SSHHHHHHHHTTSS TT  EEEEEEE TTT H:    
ExpBur          :bbbbbbbeebebbbbbbbbbbbbbeebebbbbbbeeebe:    
Contact         :                  b  bb                                                                             


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