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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TMPS2_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [246 aa] | Plasminogen :PLMN_HUMAN | |
2 | b | B 1 (A) | non-polymer(89S) | Nalpha-[trans-4-(aminomethyl)cyclohexane-1-carbonyl]-N-octyl-O-[(pyridin-4-yl)methyl]-L-tyrosinamide | 275V(T) 280V(F) 281C 296H 300K 435D 436S 437C 438Q 439G 440D 441S 459T 461W 462G 464G 472G (identity: 88.2 %/40.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5ugd_A_1 identity=40.1% |
queryA 256:IVGGESALPGAWPWQVSLHVQ-NVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKP: 354 : *** * * ******* * *** * *** ***** ** * * **** ** *: 5ugd_A_1 22:VVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT------RKDIALLKLSSP: 115 SecStr : BSSEE TTSSTTEEEEE TT EEEEEEEEETTEEEE GGGTTT GGG EEEES SBSSS TT EEEEEEEEEE TT------ S EEEEESS : ExpBur :bbbebbbeebbbbbbbbbbeeeeebebbbbbbeeebbbbbbebbeebeeeeebebbbbbbeeeeebeebbebebeebbebee------eeebbbbbbeee: Contact : b bb b b queryA 355:LTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454 : * * * *** * * * *** * * * ** ** *** * * ************ : 5ugd_A_1 116:AVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAG-LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYI: 214 SecStr : BTTB B TT TT EEEEEES TTSS TT-B EEEEEEEE HHHHTSTTTTTT TTEEEE TT S B TT TT EEEEEETTEEE: ExpBur :beeeeebbbbbebeeeeebeeeeebbbbbbbebeeeebee-ebbbbbbbbbebebbeeeebbeeebeebbbbbbeeebeebbbeebbbbbbbbebeeebb: Contact : bbbbbbb queryA 455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489 :* * **** *** **** * * ** **: 5ugd_A_1 215:LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR: 249 SecStr :EEEEEEE SSSS TT EEEEEGGGGHHHHHHHHH: ExpBur :bbbbbbeeeebbeeeebbbbbbbbebbeebebbee: Contact : b bb b b |