Protein Model on 4doq_A_1_F_1 (TEMPLATE: 4doq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (A) polymer(polypeptide(L)) [221 aa] Trypsin :TRYP_PIG
2 b F 1 (A) non-polymer(XPE) 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL 295A 296H 298V(Y) 333S(T) 337Y(F) 339S(G) 340K(N) (identity: 28.6 %/41.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4doq_A_1 identity=41.9%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                 *     *  *     * * ***    *  *** * **  * :
4doq_A_1       1:IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNID-VLEGNEQFINA----AKIITHPNFNGNTLDNDIMLIKLSSPA:  94
SecStr          : BS EE  TTS TTEEEEE-SSSEEEEEEEEETTEEEE GGG  SS EEEES SBTT-S  S  EEEEE----EEEEE TT BTTTTBT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebebbbbbbe-eeeeebbebee----eebeebeeeeeeeeebbbbbbbbeeeb:    
Contact         :                                       bb b                                  b   b bb               

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKT-SEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :* *  *  * **        *  * ***** *   *      *   *        * * *     **  *** *** *  ********** *        :
4doq_A_1      95:TLNSRVATVSLPRSCAAAGTE--CLISGWGNTKXXGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----: 186
SecStr          :  SSSS   B  SS   TT E--EEEEESS   --     SB EEEEEEB  HHHHHHHS--TTT  TTEEEES TT S B  TT TT EEEETTE----:    
ExpBur          :eeeeebeebeebeeeeeeebe--bbbbbbbbee--eeeebeebbbbebbbbeeeebeebb--eeebeebbbbbbbeebeebbbebbbbbbbbbeeb----:    

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *** ***    ****  *     **     * :
4doq_A_1     187:LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN: 223
SecStr          :EEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHHT :    
ExpBur          :bbbbbbbeeebbeeeebbbbbebbebeebbeebeeee:    


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