Protein Model on 3bg8_A_2_B_2 (TEMPLATE: 3bg8 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 2 (A) polymer(polypeptide(L)) [238 aa] Coagulation factor XIa light chain :FA11_HUMAN
2 b B 2 (A) non-polymer(G0R) N-(4-carbamimidamidobutyl)ethanamide 296H 435D 436S(A) 437C 438Q(K) 439G 440D 441S 460S 461W 462G 464G 465C 472G (identity: 85.7 %/44.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3bg8_A_2 identity=44.1%
queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFM-----FYGAGYQVEKVISHPNYDSKTKNNDIA: 347
                :****     * ***** **       * ******   ** *****       *       *** **       * *    *   * *  *       ***:
3bg8_A_2       1:IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF-YGVESPKILRVYSGILNQSEIKEDTSFFG----VQEIIIHDQYKMAESGYDIA:  95
SecStr          : BS EE  TTSSTTEEEEEE SSS EEEEEEEEEETTEEEE GGGG-TT   GGGEEEE S SBGGG  TTS  EE----EEEEEE TT   GGGS   E:    
ExpBur          :bbebeebeeeebbbbbbbbbeeeeeebbbbbbbbbeebbbbbbebb-eebeeeeebebbbebbebeebeeeeeebb----beeebebeeeeebeebebbb:    
Contact         :                                           b                                                        

queryA       348:LMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVT: 447
                :* **       *   *  **  *        **  ***      *    *  **  *     *  **     **  *****   *  * * *******  :
3bg8_A_2      96:LLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY-RGHKITHKMICAGYREGGKDACKGDSGGPLSC: 194
SecStr          :EEEESS    BTTB   B   GGGGSS    EEEEES  SSSS    SB EEEE  EE HHHHHHH -TTS   TTEEEE  TT   B  TT TT EEEE:    
ExpBur          :bbebeeebeeeeebeebeebeeeeeebebeebebbbbbbeeeeeeebeebbbbebeeeeeeebeeeb-eeeebeeebbbbbeeebeebbbebbbbbbbbb:    
Contact         :                                                                                       bbbbbbb      

queryA       448:SKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRA: 490
                :  *  * * * **** ***   ***** **    ***     *:
3bg8_A_2     195:KHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA: 237
SecStr          :EETTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHS :    
ExpBur          :eeeeebbbbbbbbbeebbbeeeebbbbbbbbebbebbeeeeee:    
Contact         :            bbb bb      b                                                                           


Input Residue Numbers for Focused Sites

ex) 2,15,123