[pdbjlvh2]Protein Model on 2oq5_A_1_B

Protein Model on 2oq5_A_1_B_1 (TEMPLATE: 2oq5 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [232 aa]	Transmembrane protease, serine 11E :TM11E_HUMAN
2	b		B 1 (A)	non-polymer(BEN)	BENZAMIDINE	435D 436S(A) 437C 438Q 441S 459T(V) 460S 461W 462G 464G(E) 465C 472G (identity: 75.0 %/42.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2oq5_A_1 identity=42.9%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGI-LRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKP: 354
                :****     * **** **     * **   *   * * ****      **  ***  *     * *  *        * *  *       ** *  *  *:
2oq5_A_1       1:IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTT-YKNPARWTASFGVTIKPSKMKRG----LRRIIVHEKYKHPSHDYDISLAELSSP:  95
SecStr          : BS EE  TTSSTTEEEEEETTEEEEEEEEEETTEEEE GGGGSS-   GGGEEEEESSBSTT SEEEE----EEEEEE TT  TT  TT  EEEEESS :    
ExpBur          :bbebeebeeeebbbbbbbbbeeebebbbbbbeeebbbbbbebbee-eeeeeebebbbbbbbeeeebebe----beeebebeebeeeeebbbbbbbbbeee:    

queryA       355:LTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSK-NNIW: 453
                :      *  ****      **       * **    *     *  * * **    **    *   *** * *** * *  * ********** *    **:
2oq5_A_1      96:VPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIW: 195
SecStr          :    SSS   B   TT    TT EEEEEES  SSTT    SB EEEEEEEE HHHHTSTTTTTT   TTEEEEE TT SSB  TT TT EEEEE TTS E:    
ExpBur          :beeeebbeebebbeeeeebeeeeebbbbbbbbeeeeeeeeeebbbbebebbeeeebbeeebbeeebeeebbbbbeeebebbbbebbbbbbbbbebeeeee:    
Contact         :                                                                                bbbb  b             

queryA       454:WLIGDTSWGSGCAKAYRPGVYGNVMVFTDWI: 484
                : * *  ***  ***   ****  *    ***:
2oq5_A_1     196:YLAGIVSWGDECAKPNKPGVYTRVTALRDWI: 226
SecStr          :EEEEEEEE SSSSBTTB EEEEETGGGHHHH:    
ExpBur          :bbbbbbbeeeebeeeebbbbbbebbebbebb:    
Contact         :     bbbb bb      b

Protein Model on 2oq5_A_1_B_1 (TEMPLATE: 2oq5 )

Input Residue Numbers for Focused Sites