Protein Model on 1gl1_B_1_J_1 (TEMPLATE: 1gl1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [239 aa] ALPHA-CHYMOTRYPSIN :CTRA_BOVIN
2 b J 1 (B) non-polymer(CD) CADMIUM ION 316R(D) 395E(D) (identity: 0.0 %/41.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1gl1_B_1 identity=41.0%
queryA       256:IVGGESALPGAWPWQVSLHVQN-VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQ-SFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQK: 353
                :** ** * ** *******      * **** *   * ******              **   * *           **     * * * **** * **  :
1gl1_B_1      16:IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSD-----VVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLST: 110
SecStr          : BT EE  TTSSTTEEEEE TT  EEEEEEEEETTEEEE GGG   TTS-----EEEES SBTT S S  EEEEEEEEEE TT BTTTTBS  EEEEESS:    
ExpBur          :bbeeeebeeebbbbbbbbbeeeeebebbbbbbeeebbbbbbebebeeeb-----ebbbbbbbeeeeeeeebebebeeebebeebeeeeebbbbbbbebee:    
Contact         :                                                             b                                      

queryA       354:PLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATE-EKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNI: 452
                :   *   *  ****           *   *** *      *   *  *   *     *         *  ******     * ** ********  **  :
1gl1_B_1     111:AASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYXXXNTPDRLQQASLPLLSNTNC--KKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGA: 206
SecStr          :     SS    B   TT    TT EEEEEE   S  ---   SB EEEEEEB  HHHH--HHHHGGG  TTEEEEE-- SS B  TT TT EEEEEETTE:    
ExpBur          :ebeeeeebebbbebeeeeebeeeeebbbbbbbbbee---eebeebbbbebebbebeeb--eeeeeeebeebbbbbb--eeebbbbeebebbbbbbeeeeb:    
Contact         :                                          b                                                         

queryA       453:WWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* * *  ****       ****  *     *      * :
1gl1_B_1     207:WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN: 245
SecStr          :EEEEEEEEE  TT  TTSEEEEEEGGGTHHHHHHHHHH :    
ExpBur          :bbbbbbbbeebeebeeeebbbbbebbebbeebeebbeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123