Protein Model on 1fak_B_1_C_1 (TEMPLATE: 1fak )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (H) polymer(polypeptide(L)) [251 aa] PROTEIN (BLOOD COAGULATION FACTOR VIIA) :FA7_HUMAN
2 b C 1 (T) polymer(polypeptide(L)) [183 aa] PROTEIN (SOLUBLE TISSUE FACTOR) :TF_HUMAN 375P(F) 376E(V) 377Q(R) 378L(F) 406E(M) 407T 408Q 409R(D) 476N(R) 479V(Q) (identity: 20.0 %/38.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1fak_B_1 identity=38.4%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAG----YQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****     *  **** * *     ***  *   * * ****  *  *    *      *         *      *  **    *   * * ****  *:
1fak_B_1       1:IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKN----WRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRL:  96
SecStr          : BS EE  TTSSTTEEEEEETTEEEEEEEE SSSEEEE GGGGTT   ----TTSEEEEES  BTT   S  EEEEEEEEEEETT  TT  TT  EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeeebbbbbbeebbbbbbbebbeebee----beebebbbbbbbeeeeeeebbebebebbbbbeebeeeeeebbbbbbbb:    

queryA       352:QKPLTFNDLVKPVCLPNPGM---MLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRC---NSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPL: 445
                :  *    * * * ***        *        ****     * *   *    *    ** *            **  * ***   *  *** ****** :
1fak_B_1      97:HQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKXXXSPNITEYMFCAGYSDGSKDSCKGDSGGPH: 196
SecStr          :SS    BTTB   B   HHHHHHTGGGS EEEEEES BSSTTS B SB EEEEEEEE HHHHHHHS  ---     TTEEEES SSSS B  TT TT EE:    
ExpBur          :eeebeeeeebeebeebeeeebeeebbeeeebebbbbbbeeeeeeebeebbbbebbbbeeeebeeebee---eeeebebbbbbbeeeeeebbbeebbbbbb:    
Contact         :                          bbbb                           bbbb                                       

queryA       446:VTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                : *     * * *  *** ***     ***  *     *    **  :
1fak_B_1     197:ATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE: 242
SecStr          :EEEETTEEEEEEEEEE SSSS TT  EEEEEGGGTHHHHHHHHHS :    
ExpBur          :bbeeeeeebbbbbbbbeeebbeebbbbbbbebbbbbebbeebeeee:    
Contact         :                              b  b                                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123