Protein Model on 7apx_F_1_A_1 (TEMPLATE: 7apx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) F 1 (F) polymer(polypeptide(L)) [361 aa] ATP-dependent RNA helicase SUB2 :SUB2_YEAST
2 b A 1 (A) polymer(polypeptide(L)) [1165 aa] THO complex subunit 2,Tho2 :THO2_YEAST 505K(E) 506M(F) 507D(N) 521N(E) 525Y(L) 538H(S) 564G(F) 565D(E) 566V(K) 567R (identity: 10.0 %/34.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7apx_F_1 identity=34.6%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   *   **    * ***  *  * ***  *     *                                         :
7apx_F_1      18:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------:  76
SecStr          :GGGG   HHHHHHHHTTT  S  HHHHHHHHHHTTT  EEE   TTSSHHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebbbbbeebeeeeeeeebeebbeebbeeebbebebeeeeebeebbbbbbbb-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7apx_F_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
                :                                                                                    *           ****:
7apx_F_1      77:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA:  97
SecStr          :-------------------------------------------------------------------------------H    TT   EEEE S HHHH:    
ExpBur          :-------------------------------------------------------------------------------ebeeeeebbbbbbbbebeeeb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
                : *  *    * **   *        **         * *      *** *****  **      ** *   * ** *  *         *    *   * :
7apx_F_1      98:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 192
SecStr          :HHHHHHHHHH TT -- S  EEEE TTS HHHHHHHHH TTT  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHHHSHH---HHHHHHHHHHTS :    
ExpBur          :eebbebbeebbeee--eebeebbbeeeeeeeebbeebeeeeebbbbbbbbbebbeebbeeeebebeebebbbbbebbebeeeee---beebbeebbeebe:    

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :  *  **   ****                                                                                      :
7apx_F_1     193:RDK--QVMMFSATL--------------------------------------------------------------------------------------: 204
SecStr          :SS --EEEEE S  --------------------------------------------------------------------------------------:    
ExpBur          :eeb--ebbebbeee--------------------------------------------------------------------------------------:    

queryA       497:AVRAIKEH------------------------------------------------------KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC: 542
                :                                                                 * ***         *                 *  :
7apx_F_1     205:--------SQEIXXXXXXXXQNPXXXXXXXXXXXXXXGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPA: 287
SecStr          :-------- TT --------   -------------- EEEEEEE  GGGHHHHHHHHHHHS  SEEEEE S HHHHHHHHHHH---------HHTT  E:    
ExpBur          :--------eeee--------eee--------------eeebbbbeeeeeebeeebeebbeebeeebbbbbbeeeeebeebbeeb---------eeeeeeb:    
Contact         :                                                b  b   bb  bbbbbb             b   b            b    

queryA       543:VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :   **  *  **      **    *    ***  *****      **  *  *   * ** ** **    ***** *      :
7apx_F_1     288:ITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDE: 370
SecStr          :EEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS   SSEEEEEESS  SSHHHHHHHHTTSSTTS  EEEEEEE SHHHH:    
ExpBur          :bbbbeeeeeebeeeeeeebeeeeeebbbbbeebbeeeebeebbbbbbbbbbeebebbeebbebbebeeeebbbbbbbeeeebe:    
Contact         :                     bbbb                                                                           


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