Protein Model on 6yxy_J_1_F_1 (TEMPLATE: 6yxy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) J 1 (EB) polymer(polypeptide(L)) [663 aa] mt-LAF2 :D0A9G9_TRYB9
2 b F 1 (AA) polymer(polyribonucleotide) 12S ribosomal RNA 38G(Q) 40G(K) 514R 516K(G) 517I 518D 519C 521N(T) 522L(A) 525Y(H) 526F(R) 546H 547G(A) 548D(A) 549R(L) 550K(P) 551P(A) 554R 555K(R) 572T 573D 574V 590V(F) 594D(T) (identity: 37.5 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6yxy_J_1 identity=34.4%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :   *  *   **   *        *  **      *    *   **  * *** *   *  *                                      :
6yxy_J_1      98:VTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQ--------------------------------------: 159
SecStr          :   SSSS   HHHHHHHHHTT  S  HHHHHHHHHHHTT EEEEE  SSSSHHHHHHHHHHH--------------------------------------:    
ExpBur          :eeebeebebeeebeebbeebeeeebbbbbbbbbbbbbeeebbbbbbbbebebebbbbbbbbb--------------------------------------:    
Contact         :                                     b b                                                            

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
6yxy_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300
                :                                                                                                    :
6yxy_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR: 400
                :                                                                                                    :
6yxy_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       401:LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA: 500
                :                                                                                                    :
6yxy_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       501:IKEHKMD---------------------------------------------------------------------------------------------: 507
                :                                                                                                    :
6yxy_J_1     160:-------NMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDD: 252
SecStr          :-------HHHHHHHTS     SS  SEEEE SSHHHHHHHHHHHHHHHHHH   EEE    TTHHHHHHHHHHHS  SEEEE HHHHHHHHHTTSS  TT:    
ExpBur          :-------bbbebeeeeebeeeebbbbbbbbbbbebbbebbeebbebbbeebebebbbbbeeeebeeebeebbeeeebbbbbbbbebbbebbeeeebebeb:    
Contact         :                               bbb   b  bb                bbbbbbbbb bb  b         b bb  b  b bb     

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
6yxy_J_1     253:LRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQ: 352
SecStr          :  EEEEETHHHHTSGGGTTHHHHHHHHHHHHHH  SS     EEEEEES   HHHHHHHHTT SSEEEE  TTTTTS  TTEEEEEEE SSGGGHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbeeeeebbbebbeebeebeeeeeeeebebbbbbbbbbbbbebbebbbeebeebbbbbeeeebbeeeeebeeebeebeeeeebbeebe:    
Contact         :              bbbbb  bb  b   b                      bb  bb  bb    b    b                  bbb  b    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
6yxy_J_1     353:HLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNADEMKERVRH: 452
SecStr          :HHHHHTT       SHHHHHHHHHS       HHHHHHHH ----------------------------------------------- HHHHHHHHHHH:    
ExpBur          :ebbeebebebeeeeeeeeeeebeeeeeeeeeeeeebeeeee-----------------------------------------------eeeeeeeeebbe:    
Contact         :b  bb   b                                                                                           

queryA       508:---------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV: 574
                :                                   *** *  ***           *          *  **       *      *  *    *  ***:
6yxy_J_1     453:ALEGVRPVHWEHLTTVAAPFTCHVPRTVFADGKRCIIFTR-GIDCATAVYHRLRGCG--------YTCSLLHAALPAAVRRRMFADFASGRTNILCSTDV: 543
SecStr          :HHHTB  EEETTEEE       SS      SS  EEEE S-HHHHHHHHHHHHHHHT--------  EEEE TTS HHHHHHHHHHHHHTS SEEEE GG:    
ExpBur          :ebbbbeebebeebebebeebebebebebbbebebbbbbbe-eeeebeebbeebbeeb--------bbbbbbbeebeeeebeebbebbbbbebbbbbbbeb:    
Contact         :                                       b bbbb bb  bb                   bbbbbb  bb                bbb

queryA       575:AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618
                :**** * * *  * *   *     *  * **  *  * *   **:
6yxy_J_1     544:AARGLDLH-VDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSL: 586
SecStr          :GGSS    - SEEEESS  SSHHHHHHHHTTT  TTB EEEEEE:    
ExpBur          :bbbbbbbb-bbbbbbbbbbebbbebbbbbbbbbbeebebbbbbb:    
Contact         :               b   b                                                                                


Input Residue Numbers for Focused Sites

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