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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | J 1 (EB) | polymer(polypeptide(L)) [663 aa] | mt-LAF2 :D0A9G9_TRYB9 | |
2 | b | F 1 (AA) | polymer(polyribonucleotide) | 12S ribosomal RNA | 38G(Q) 40G(K) 514R 516K(G) 517I 518D 519C 521N(T) 522L(A) 525Y(H) 526F(R) 546H 547G(A) 548D(A) 549R(L) 550K(P) 551P(A) 554R 555K(R) 572T 573D 574V 590V(F) 594D(T) (identity: 37.5 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6yxy_J_1 identity=34.4% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** * * ** * * ** * *** * * * : 6yxy_J_1 98:VTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQ--------------------------------------: 159 SecStr : SSSS HHHHHHHHHTT S HHHHHHHHHHHTT EEEEE SSSSHHHHHHHHHHH--------------------------------------: ExpBur :eeebeebebeeebeebbeebeeeebbbbbbbbbbbbbeeebbbbbbbbebebebbbbbbbbb--------------------------------------: Contact : b b queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6yxy_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300 : : 6yxy_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR: 400 : : 6yxy_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 401:LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA: 500 : : 6yxy_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 501:IKEHKMD---------------------------------------------------------------------------------------------: 507 : : 6yxy_J_1 160:-------NMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDD: 252 SecStr :-------HHHHHHHTS SS SEEEE SSHHHHHHHHHHHHHHHHHH EEE TTHHHHHHHHHHHS SEEEE HHHHHHHHHTTSS TT: ExpBur :-------bbbebeeeeebeeeebbbbbbbbbbbebbbebbeebbebbbeebebebbbbbeeeebeeebeebbeeeebbbbbbbbebbbebbeeeebebeb: Contact : bbb b bb bbbbbbbbb bb b b bb b b bb queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 6yxy_J_1 253:LRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQ: 352 SecStr : EEEEETHHHHTSGGGTTHHHHHHHHHHHHHH SS EEEEEES HHHHHHHHTT SSEEEE TTTTTS TTEEEEEEE SSGGGHHHHHH: ExpBur :bbbbbbbbbbbbbbeeeeebbbebbeebeebeeeeeeeebebbbbbbbbbbbbebbebbbeebeebbbbbeeeebbeeeeebeeebeebeeeeebbeebe: Contact : bbbbb bb b b bb bb bb b b bbb b queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 6yxy_J_1 353:HLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNADEMKERVRH: 452 SecStr :HHHHHTT SHHHHHHHHHS HHHHHHHH ----------------------------------------------- HHHHHHHHHHH: ExpBur :ebbeebebebeeeeeeeeeeebeeeeeeeeeeeeebeeeee-----------------------------------------------eeeeeeeeebbe: Contact :b bb b queryA 508:---------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV: 574 : *** * *** * * ** * * * * ***: 6yxy_J_1 453:ALEGVRPVHWEHLTTVAAPFTCHVPRTVFADGKRCIIFTR-GIDCATAVYHRLRGCG--------YTCSLLHAALPAAVRRRMFADFASGRTNILCSTDV: 543 SecStr :HHHTB EEETTEEE SS SS EEEE S-HHHHHHHHHHHHHHHT-------- EEEE TTS HHHHHHHHHHHHHTS SEEEE GG: ExpBur :ebbbbeebebeebebebeebebebebebbbebebbbbbbe-eeeebeebbeebbeeb--------bbbbbbbeebeeeebeebbebbbbbebbbbbbbeb: Contact : b bbbb bb bb bbbbbb bb bbb queryA 575:AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618 :**** * * * * * * * * ** * * * **: 6yxy_J_1 544:AARGLDLH-VDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSL: 586 SecStr :GGSS - SEEEESS SSHHHHHHHHTTT TTB EEEEEE: ExpBur :bbbbbbbb-bbbbbbbbbbebbbebbbbbbbbbbeebebbbbbb: Contact : b b |