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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | D 1 (7) | polymer(polypeptide(L)) [390 aa] | Eukaryotic initiation factor 4A-III :IF4A3_HUMAN | |
2 | b | F 1 (9) | polymer(polypeptide(L)) [144 aa] | Protein mago nashi homolog 2 :MGN2_HUMAN | 26T(S) 27D(A) 31E(R) 47E(Q) 412S(P) 413F(H) 414D(E) 417K(E) 432K 433G(R) 434E(D) 435D(E) 437V(T) 439D(E) 445V(F) 595E(N) 596K(R) 597Q(E) 609A(Y) 610E(G) 624E(I) 625K(R) 628Y(R) 629H(D) 637G(Q) 638C(Y) 640N(S) 641T 642R(Q) 644K(D) 645E (identity: 9.7 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6qdv_D_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 6qdv_D_1 18:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 77 SecStr :SGGGS HHHHHHHHHHT S HHHHHHHHHHHHT EEEE TTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbb----------------------------------------: Contact : bb b b queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 6qdv_D_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 6qdv_D_1 78:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 92 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------ebebeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 6qdv_D_1 93:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 189 SecStr :SSHHHHHHHHHHHHHHTTTTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS TT EEEEETHHHHTSTTTHHHHHHHHTTS T: ExpBur :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbeebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee: queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 6qdv_D_1 190:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 248 SecStr :T ------EEEEEES - HHHHHHGGGT SS EEE GGG S TTEEEEEEEE--------SS------------------------THHH--HHHHH: ExpBur :eb------bbbbbbbbb-beebbebbeebbeebbebbbeeeebbbeebebbbbeb--------ee------------------------eeeb--bebbb: Contact : bbb b bbbb b b b queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** *** * * ** **: 6qdv_D_1 249:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 334 SecStr :HHHGGGTTS-----EEEEE S HHHHHHHHHHH---------HTTT EEE TTS HHHHHHHHHHHHHTS EEEE GGGTSS TTEEEEEESS : ExpBur :ebbeebeeb-----bbbbbbeeeebbeebbebb---------eeeebebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbb: queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 6qdv_D_1 335:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 381 SecStr :SSHHHHHHHHTTSSGGG EEEEEEEEGGGHHHHHHH-----HHHHT EEE: ExpBur :eeebbbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee: Contact : bbb bb bb bb bb bbb bb |