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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [417 aa] | ATP-dependent RNA helicase DDX3X :DDX3X_HUMAN | |
2 | b | C 1 (C) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*GP*CP*AP*AP*GP*AP*GP*UP*GP*GP*CP*C)-3') | 3A(S) 5S 23L(T) 24L(R) 514R(E) 515T 516K 546H 547G 554R 572T 573D(A) 574V (identity: 61.5 %/33.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6o5f_A_1 identity=33.3% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : ** * * ** * ** * * * ****** ** * * : 6o5f_A_1 48:IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIY-----------------------------------: 112 SecStr : SSGGGS HHHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHH-----------------------------------: ExpBur :beebeebebeebbeebbeebeeeebebbbbbbbbbbeeebbbbbbbeeebebbbbbbbbbbbbbb-----------------------------------: Contact : b b bb queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6o5f_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286 : : 6o5f_A_1 113:--------------------------------------------------------------------------------------SDGPGEALRAMXXX: 126 SecStr :--------------------------------------------------------------------------------------HHTTHHHHHT ---: ExpBur :--------------------------------------------------------------------------------------eebbeeeeeee---: queryA 287:---------PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS: 377 : * * * **** * * * ** * ** * * ***** * ** * ******* * : 6o5f_A_1 127:XXXXXXKQYPISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD: 223 SecStr :------ B SEEEE SSHHHHHHHHHHHHHHST---TSS EEEE TTS HHHHHHHHTT SEEEE HHHHHHHHHTTSB TT EEEESSHHHHHH: ExpBur :------eebbbbbbbbbbeebbeebbeebebbbb---ebebebbbbebeeebeebbebbeebbebbbbbbebbbebbeeeebbbeebebbbbbbbbebbe: queryA 378:QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP: 477 : * * * * * * *** ** * * : 6o5f_A_1 224:MGFEPQIRRIVEQ-DTMPPKGVR-HTMMFSAT---------------FPKEIQMLARDFLDEYIFLAVXXXXXXXENITQKV------------------: 288 SecStr :TT HHHHHHHHTS-SS BTTB-EEEEEESS--------------- HHHHHHHHHH SS EEEE ------- EEEEE------------------: ExpBur :eebeeebbebbee-eebbeeeeb-bbbbbbee---------------eeeebbebbeebbeebbebee-------eebebeb------------------: queryA 478:GANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA: 576 : * * * * * ** * ** * * **** * * * * * * ***: 6o5f_A_1 289:------VWVEESD--KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA: 371 SecStr :------EE GGG--HHHHHHHHHHT TT EEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHHTSS EEEE GGGT: ExpBur :------eebeeee--beeebbebbeeeeeebbbbbbbeeeeebeebeeebeeee---------bebbbbbeebeeeeeeebeeebeeeebebbbbbeeeb: Contact : bbb bb b bbb queryA 577:RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618 :* * *** ** ******* ** *** * : 6o5f_A_1 372:RXXXXSNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF: 413 SecStr : ---- BSEEEESS SSHHHHHHHHTTBS SS EEEEEE: ExpBur :e----eebebbbbbbbbeebebbbbbbeebeeeeeebebbbb: |