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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [377 aa] | Nucleolar RNA helicase 2 :DDX21_HUMAN | |
2 | b | H 1 (B) | non-polymer(ANP) | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 377S(D) 378Q(U) 427T(H) 428W (identity: 25.0 %/34.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6l5n_B_1 identity=34.5% |
queryA 20:MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW: 119 : * * *** * * * ** *** * ** * * * * : 6l5n_B_1 20:VTFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGR--------------------------------------------: 73 SecStr : SS H--HHHHHHHHHHHT EEEE TTS HHHHHHHHHHHHHHTS TT --------------------------------------------: ExpBur :beeeee--bbeebbebbeeeebbbbbbbbbeebbbbbbbbbbbebbeeeeeeeeeb--------------------------------------------: queryA 120:HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP: 219 : : 6l5n_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 220:PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR: 319 : ** * * **** * * ** : 6l5n_B_1 73:-----------------------------------------------------------------RAPQVLVLAPTRELANQVSKDFSDITK-----KLS: 102 SecStr :----------------------------------------------------------------- SEEEE SSHHHHHHHHHHHHHT S-----SS : ExpBur :-----------------------------------------------------------------bbbebbbbbbbebbbebbbebbeebbe-----ebb: queryA 320:ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS: 419 : ** * ** ** ****** * *** * **** * * * * * * *** : 6l5n_B_1 103:VACFYGGTPYGGQFERURNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQULDUGFADQVEEILSVAYKKDSEDNP-QTLLFSATC---------: 192 SecStr :EEEE SSS HHHHHHHHHH SEEEE HHHHHHHHHTTS TT EEEEETHHHHTSHHHHHHHHHHHTTT TT SSS -EEEEEES ---------: ExpBur :bbbbbbebeeeebeeeeeebbbbbbbbbebbeebeeeeebebeebebbbbbbbbebbeeebbeebeebbeebbeeeeeebb-bbbbbbbbe---------: Contact : bb queryA 420:EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC: 519 : * ** * * * * * * * * * **** ** : 6l5n_B_1 193:------PHWVFNVAKKYUKSTYEQV--------DLIGKKTQKTAITVEHLAIKCH----------WTQRAAVIGD--VIRVYSGHQ-GRTIIFCETKKEA: 265 SecStr :------ THHHHHHGGGS TT EEE--------ESS SSS S TTEEEEEEE ----------TTTHHHHHHH--HHHHHS SS- EEEEE SSHHHH: ExpBur :------eeebeeebeebbeeeeeeb--------eebeeeeebbbeebebbbbebe----------eeebbeebbe--bbeeebeee-bbbbbbbeeeeeb: Contact : bb queryA 520:DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 : * * * * **** * * * * * * ***** ** * ** * * ** ** *** * * * : 6l5n_B_1 266:QELSQ------NSAIKQDAQ----SLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFY: 355 SecStr :HHHHH------STTTGGGEE----EESTTS HHHHHHHHHHHHHTS SEEEE GGGSSS TTEEEEEESS SSHHHHHHHHTTSSGGG EEEEEEE: ExpBur :eebbe------eebbeeebe----bbbeebebeebeebbebbeeeebbbbbbbebbbbbbebeebebbbbbbbbeebbbbbbbbbbbbbeeeebbbbbbb: queryA 620:ATEKE: 624 : *: 6l5n_B_1 356:QHKEE: 360 SecStr : GGGH: ExpBur :beebe: |