Protein Model on 5xjc_UA_1_G_1 (TEMPLATE: 5xjc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) UA 1 (u) polymer(polypeptide(L)) [390 aa] Eukaryotic initiation factor 4A-III :IF4A3_HUMAN
2 b G 1 (G) polymer(polyribonucleotide) pre-mRNA 294P 295S(T) 296R 325G 326G 327V(T) 329A(V) 346T 347P 348G 349R 352D 355S(R) 374G(E) 379G 380Y(F) 383F(Q) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 66.7 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5xjc_UA_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
5xjc_UA_1     39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  98
SecStr          :SGGGS   HHHHHHHHHHT  S  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbb----------------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
5xjc_UA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
5xjc_UA_1     99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebebeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
5xjc_UA_1    114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHTSTTTHHHHHHHHTTS T:    
ExpBur          :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:    
Contact         :bbb                            bbb b                bbbb  b  b                  b    bb  b          

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
5xjc_UA_1    211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269
SecStr          :T ------EEEEEES  - HHHHHHGGGT SS EEE   GGG S TTEEEEEEEE--------SS------------------------THHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbebbeebbeebbebbbeeeebbbeebebbbbeb--------ee------------------------eeeb--bebbb:    

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
5xjc_UA_1    270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355
SecStr          :HHHGGGTTS-----EEEEE S HHHHHHHHHHH---------HTTT   EEE TTS HHHHHHHHHHHHHTS  EEEE GGGTSS   TTEEEEEESS  :    
ExpBur          :ebbeebeeb-----bbbbbbeeeebbeebbebb---------eeeebebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbb:    
Contact         :                    bbb                             bb      b                 bbb                   

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
5xjc_UA_1    356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402
SecStr          :SSHHHHHHHHTTSSGGG  EEEEEEEEGGGHHHHHHH-----HHHHT  EEE:    
ExpBur          :eeebbbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:    
Contact         :b

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