Protein Model on 5elx_A_1_C_1 (TEMPLATE: 5elx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [391 aa] ATP-dependent RNA helicase DBP5 :DBP5_YEAS7
2 b C 1 (A) non-polymer(M2A) [(2~{R},3~{R},4~{R},5~{S})-2-(6-aminopurin-9-yl)-4-oxidanyl-5-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate 4F 20M 22W(F) 24L(K) 25P 26T(S) 29Q 47E(Q) 48T(S) 49G 50S(T) 51G 52K 53T 308Q(E) 580D 608R 609A(F) (identity: 55.6 %/34.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5elx_A_1 identity=34.7%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                : * * *  **       *    *  **    ** *             * *** ***                                           :
5elx_A_1       3:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------:  63
SecStr          :SSTTS   HHHHHHHHHTT  S  HHHHHHHHHHH SS   EEEE  TTS HHHHHHHHHH---------------------------------------:    
ExpBur          :bbeebebeeebbebbeebeeeebbebbeebbeebbeeeeebbbbbbebbeebbbbbbbbbb---------------------------------------:    
Contact         : b               b b bbb  b                   bbbbbbb                                               

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
5elx_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292
                :                                                                                              * *   :
5elx_A_1      64:-------------------------------------------------------------------------------------TRVNPEDASPQAICL:  78
SecStr          :-------------------------------------------------------------------------------------HH  TTS S  EEEE:    
ExpBur          :-------------------------------------------------------------------------------------ebbeeeeebbbbbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391
                : ****** ***       *     *    **                    *****   **       *      ******  *  **  *   *     :
5elx_A_1      79:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 171
SecStr          : SSHHHHHHHHHHHHHHTTTS---   EEEESTTSS SSS---- B  SEEEE HHHHHHHHHTT B  TT  EEEEETHHHHHHSTTHHHHHHHHHTTS:    
ExpBur          :bebbbbbbbbbeebeebbeeb---ebebebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbbeeeebbeebbebeeeb:    
Contact         :               b                                                                                    

queryA       392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
                :*  *      *    ***     *     **        *       *             *                                      :
5elx_A_1     172:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----------------------------------DV: 230
SecStr          : TT ------EEEEEES   H-HHHHHHHHHS S EEE   GGGSS TTEEEEEEE SSHHHHH----------------------------------HH:    
ExpBur          :eeeb------bbbbbbbbbee-ebbeebeebbeebbebebeeeebbbeebebbebebeeeebbb----------------------------------eb:    

queryA       492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
                :*   *    *        ***  **     *        *     **  *   ****    **      *  *    ** * * ******  *  * *  :
5elx_A_1     231:LTELYGLMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 316
SecStr          :HHHHHTTTTS-----SEEEEE S HHHHHHHH-------HHHHHTT   EE--E TTS HHHHHHHHHHHHTTS SEEEE GGGSSS   TTEEEEEESS:    
ExpBur          :bbebbebbee-----ebbbbbbeeeeebeebe-------eebeeeeeebbb--bbeeeebeebeebbeebbeeebebbbbbeebbbbbebeebbbbbbbb:    
Contact         :                                                                                        b           

queryA       592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619
                :**           * ***** **  * * *** *:
5elx_A_1     317:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 350
SecStr          :  B TTSSB HHHHHHHHTTSS TT  EEEEEEE:    
ExpBur          :bbeeeeeebbbbbbbbbbbbbbbeeeebbbbbbb:    
Contact         :                      bb                                                                            


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