[pdbjlvh2]Protein Model on 4d26_A_1_B

Protein Model on 4d26_A_1_B_1 (TEMPLATE: 4d26 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [430 aa]	BMVLG PROTEIN :O01378_BOMMO
2	b		B 1 (D)	polymer(polyribonucleotide)	5'-R(UPGPAPCPAPUP)-3'	294P 295S(T) 296R 325G 326G 329A(V) 346T 347P 348G 349R 352D 380Y(F) 514R(E) 515T 516K 546H 547G 554R 572T 573D(A) 574V (identity: 76.2 %/36.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4d26_A_1 identity=36.5%

queryA        25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
                :** **   ** *  * *    * ****** **  * *       **                                                      :
4d26_A_1      73:PTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKD------------------------------------------------------: 118
SecStr          :  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHHS   ------------------------------------------------------:    
ExpBur          :bbbbbbbbbbbbeeebbbbbbbbbbbebbbbbbbbbbbbbbeeeee------------------------------------------------------:    

queryA       125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
                :                                                                                                    :
4d26_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA---------PKALIVEPSRELAEQTLNNIKQFKKYIDN: 315
                :                                                                       *   ** * ***  *  *    *      :
4d26_A_1     119:--------------------------------------------------------------LISENGCAQPQVIIVSPTRELTLQIFNEARKFSY---G: 153
SecStr          :--------------------------------------------------------------  EETTEE  SEEEE SSHHHHHHHHHHHHHHTT---T:    
ExpBur          :--------------------------------------------------------------eeeeeebbbbbbbbbbbbebbbebbbebbbbbbe---e:    
Contact         :                                                                              bbb                   

queryA       316:PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV: 415
                :  *      ** * * *      *  * * ***** * *         *** *** **  *  *    *  *    *      ** *    ***    * :
4d26_A_1     154:SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDQADCMLDMGFMPSIEKMMLH-PTMVETTKR-QTLMFSATFPE-DI: 250
SecStr          :SS  EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHTTSB  TT  EEEEETHHHHTSTTTHHHHHHHHT -TTS  GGGS-EEEEEES   H-HH:    
ExpBur          :eebebbbbbbbbbeeebbeebeebbbbbbbbbebbbebbeeeebbbeebbbbbbbbbbbbbeeeebebbeebbee-eebeeeeeb-bbbbbbbbbee-eb:    
Contact         :         bb  b                bbbb  b                           b                                   

queryA       416:KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT: 515
                :  *                                    *    *       **                 *  *  *       * *        *  *:
4d26_A_1     251:QHLAGRFLN----------------------------NYLFVAVGIVGGASTDVE------------QIFIEVTKYEKRNSLKQLIEENDGKRILVFVET: 310
SecStr          :HHHHTTS S----------------------------S EEEEESSTT   TTEE------------EEEEE  TTTHHHHHHHHHHTTTT  EEEE S :    
ExpBur          :beebeebbe----------------------------eebbbbbeeebbbbebbe------------bebeebeeeebeebbeebbeebeeebbbbbbee:    
Contact         :                                                                                                  bb

queryA       516:KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA: 615
                :*   *        *         *      ****   **   *  ** *    *  * ***** **  *  * *  **     ******* **    * *:
4d26_A_1     311:KRNADFIAAMLSEQ---------QLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKA: 401
SecStr          :HHHHHHHHHHHHHT---------T  EEEE TTS HHHHHHHHHHHHHSS SEEEE GGGSSS   TT  EEEESS  S HHHHHHHHTTSS TT  EEE:    
ExpBur          :eebbeebbebbeee---------eeebbbbbeeeebeebbebbebbeeeebebbbbbebbbbbbebeebebbbbbbbbeebbebbbbbbbbbbbbeebeb:    
Contact         :b                             bb      b                 bbb                                         

queryA       616:ISLVATEKE: 624
                : *       :
4d26_A_1     402:VSFYDSDQD: 410
SecStr          :EEEE HHHH:    
ExpBur          :bbbbbeeeb:

Protein Model on 4d26_A_1_B_1 (TEMPLATE: 4d26 )

Input Residue Numbers for Focused Sites