[pdbjlvh2]Protein Model on 4brw_A_1_D

Protein Model on 4brw_A_1_D_1 (TEMPLATE: 4brw )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [376 aa]	ATP-DEPENDENT RNA HELICASE DHH1 :DHH1_YEAST
2	b		D 1 (A)	non-polymer(1PE)	PENTAETHYLENE GLYCOL	49G 50S(T) 53T 298L 300E(L) 301Q 304N(Q) 305N(V) (identity: 50.0 %/35.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4brw_A_1 identity=35.5%

queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *       *      *     *  ** * **    * * *  *  * *** ** **    *   *   *                              :
4brw_A_1       2:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------:  71
SecStr          : GGGS   HHHHHHHHHTT  S  HHHHHHHHHHHHT  EEEE    HHHHHHHHHHHHHH  TTS S  ------------------------------:    
ExpBur          :ebeebebeeebeebbeeeeeeebeebbeebbebbeeeebbebbbebeeebbbbbbbbbbeebeeeeeebb------------------------------:    
Contact         :                                              bb  b                                                 

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
4brw_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
                :                                                                                  *   ***  * **** **:
4brw_A_1      68:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT:  85
SecStr          :---------------------------------------------------------------------------------- S  EEEE SSHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb:    
Contact         :                                                                                               b bb 

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :        *             **   **    *   * * ******  ** *     **       ****  **      *       *         *:
4brw_A_1      86:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 176
SecStr          :HHHHHHHTTTTT---  EEEE SSS HHHHHHHTTS  SEEEE HHHHHHHHHTTSS  TT  EEEETTGGGGSSHHHHHHHHHHHTTS SS ------E:    
ExpBur          :bebbeebbeebe---bebbbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbeebbeeeeeeebeebbeebeeeb------b:    
Contact         : bb                                                                                                 

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501
                :    ***     *     *  * *    *  *      *     *    *   *     *  *                                     :
4brw_A_1     177:SLLFSATF-PLTVDEFMDKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI-------------------------------------: 238
SecStr          :EEEEESS -  S HHHHHHH  S EEEE S S B TTEEEEEEE  GGGHHHHHHHHHHHS  -------------------------------------:    
ExpBur          :bbbbbbbb-bbebeebbeebbeeeeebeebeebbbeebebbebebeeeebeebbeebbeebeb-------------------------------------:    

queryA       502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601
                :      ******        *       *          **   *   *  **      *  * ** * * *   *****  *  ***   *     * *:
4brw_A_1     239:-----NQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH: 324
SecStr          :-----SEEEEE SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHTTSSSEEEE   SS     TTEEEEEESS  SSHHHHHH:    
ExpBur          :-----ebbbbbbeeeeebeebbeebeeee---------eebeebbeebeeeeeeebeeebeeeebebbbbbeeeeeeeebeebbbbbbbbbbeebeebbe:    

queryA       602:RIGRVGRAERMGLAISLV: 619
                :**** **    **** * :
4brw_A_1     325:RIGRSGRFGHLGLAINLI: 342
SecStr          :HH BS SS   EEEEEEE:    
ExpBur          :bbbbeeeeebebbbbbbb:

Protein Model on 4brw_A_1_D_1 (TEMPLATE: 4brw )

Input Residue Numbers for Focused Sites