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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [376 aa] | ATP-DEPENDENT RNA HELICASE DHH1 :DHH1_YEAST | |
2 | b | D 1 (A) | non-polymer(1PE) | PENTAETHYLENE GLYCOL | 49G 50S(T) 53T 298L 300E(L) 301Q 304N(Q) 305N(V) (identity: 50.0 %/35.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4brw_A_1 identity=35.5% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * * * * ** * ** * * * * * *** ** ** * * * : 4brw_A_1 2:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------: 71 SecStr : GGGS HHHHHHHHHTT S HHHHHHHHHHHHT EEEE HHHHHHHHHHHHHH TTS S ------------------------------: ExpBur :ebeebebeeebeebbeeeeeeebeebbeebbebbeeeebbebbbebeeebbbbbbbbbbeebeeeeeebb------------------------------: Contact : bb b queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 4brw_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302 : * *** * **** **: 4brw_A_1 68:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT: 85 SecStr :---------------------------------------------------------------------------------- S EEEE SSHHHHHHH: ExpBur :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb: Contact : b bb queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : * ** ** * * * ****** ** * ** **** ** * * *: 4brw_A_1 86:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 176 SecStr :HHHHHHHTTTTT--- EEEE SSS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEETTGGGGSSHHHHHHHHHHHTTS SS ------E: ExpBur :bebbeebbeebe---bebbbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbeebbeeeeeeebeebbeebeeeb------b: Contact : bb queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 : *** * * * * * * * * * * * * : 4brw_A_1 177:SLLFSATF-PLTVDEFMDKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI-------------------------------------: 238 SecStr :EEEEESS - S HHHHHHH S EEEE S S B TTEEEEEEE GGGHHHHHHHHHHHS -------------------------------------: ExpBur :bbbbbbbb-bbebeebbeebbeeeeebeebeebbbeebebbebebeeeebeebbeebbeebeb-------------------------------------: queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : ****** * * ** * * ** * * ** * * * ***** * *** * * *: 4brw_A_1 239:-----NQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH: 324 SecStr :-----SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTSSSEEEE SS TTEEEEEESS SSHHHHHH: ExpBur :-----ebbbbbbeeeeebeebbeebeeee---------eebeebbeebeeeeeeebeeebeeeebebbbbbeeeeeeeebeebbbbbbbbbbeebeebbe: queryA 602:RIGRVGRAERMGLAISLV: 619 :**** ** **** * : 4brw_A_1 325:RIGRSGRFGHLGLAINLI: 342 SecStr :HH BS SS EEEEEEE: ExpBur :bbbbeeeeebebbbbbbb: |