Protein Model on 4bru_A_1_B_1 (TEMPLATE: 4bru )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [375 aa] ATP-DEPENDENT RNA HELICASE DHH1 :DHH1_YEAST
2 b B 1 (B) polymer(polypeptide(L)) [29 aa] ENHANCER OF MRNA-DECAPPING PROTEIN 3 :EDC3_YEAST 455L(F) 457E 458R(E) 460G(Q) 462S(L) 463H 464I(C) 475T 484M(L) 517I(N) 518D(R) 521N(L) 522L 525Y(K) 528Q(D) 529Q(L) 590V(F) (identity: 23.5 %/35.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4bru_A_1 identity=35.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *       *      *     *  ** * **    * * *  *  * *** ** **    *   *   *                              :
4bru_A_1       2:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------:  71
SecStr          : GGGS   HHHHHHHHHHT  S  HHHHHHHHHHTTT  EEEE   SHHHHHHHHHHHHHH  TTS S  ------------------------------:    
ExpBur          :ebeebebeeebeebbeeeeeeebeebbeebbebbeeeebbbbbbebeeebbbbbbbbbbeebeeeeeebb------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
4bru_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
                :                                                                                  *   ***  * **** **:
4bru_A_1      68:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT:  85
SecStr          :---------------------------------------------------------------------------------- S  EEEE SSHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb:    

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :        *             **   **    *   * * ******  ** *     **       ****  **      *       *         *:
4bru_A_1      86:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 176
SecStr          :HHHHHHHTTTTT---  EEEE SSS HHHHHHHTTS  SEEEE HHHHHHHHHTT S  TT  EEEETTGGGGSSHHHHHHHHHHHTTS SS ------E:    
ExpBur          :bebbeebbeebe---bebbbbbeeeebeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbeebbeeeeeeebeebbeebbeeb------b:    

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502
                :    ***     *     *  * *    *  *                      *   * *          **          *                :
4bru_A_1     177:SLLFSATF-PLTVDEFMDKHLHKPYEINLMEELTLKGITQYYA---------FVEERQKLHCL--------NT--------LFSKL--------------: 236
SecStr          :EEEEESS -  S SHHHHHH SS EEEE S S B TTEEEEEE---------E  TTTHHHHH--------HH--------HHHHS--------------:    
ExpBur          :bbbbbbbb-eeebeebbeebbeeeeebeebeebbbeebebbeb---------ebeeeebeebb--------ee--------bbeeb--------------:    
Contact         :                                                    b bb b bbb          b        b                  

queryA       503:EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR: 602
                :     ******        *       *          **   *   *  **      *  * ** * * *   *****  *  ***   *     * **:
4bru_A_1     237:--QINQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR: 325
SecStr          :--  SSEEEE SSHHHHHHHHHHHHHHT---------  EEEE TTS HHHHHHHHHHHHHTSSSEEEES   S  S  SS  EEEESS  SSHHHHHHH:    
ExpBur          :--eeebbbbbbeeeeebeebbebbeeee---------eebeebbeebeeeebebbbeebeeeebebbbbeebeeeeebbeebbbbbbbbbbeebeebbeb:    
Contact         :              bb  bb  b  bb                                                            b            

queryA       603:IGRVGRAERMGLAISLV: 619
                :*** **    **** * :
4bru_A_1     326:IGRSGRFGHLGLAINLI: 342
SecStr          :H BS SS   EEEEEEE:    
ExpBur          :bbbeeeeebebbbbbbb:

Input Residue Numbers for Focused Sites

ex) 2,15,123