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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [375 aa] | ATP-dependent RNA helicase DBP5 :DBP5_YEAST | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [295 aa] | Nucleoporin GLE1 :GLE1_YEAST | 15Q(K) 18E(Y) 21D(K) 23L(Q) 312Y(F) 496Y 497A(G) 498V 499R(M) 500A(T) 501I 507D(G) 536K(E) 537G 538H 539Q(E) 563K(E) 564G 565D(R) 567R(K) 611R (identity: 33.3 %/33.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3rrm_A_1 identity=33.4% |
queryA 8:GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG: 105 :* ** * * ** ** * * *** *** : 3rrm_A_1 11:GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML--------------------------------------------: 66 SecStr : HHHHHHHHHTT S HHHHHHHHHHHSSS EEEE TTSSHHHHHHHHHH--------------------------------------------: ExpBur :eeeeebeebbeebeeeeebebbeebbeebbeeeeebbbbbbeeeebbbbbbbbbbb--------------------------------------------: Contact : b b b b queryA 106:SDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKF: 205 : : 3rrm_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 206:SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPSRE: 297 : * * ****: 3rrm_A_1 67:--------------------------------------------------------------------------------TRVNPEDASPQAICLAPSRE: 86 SecStr :--------------------------------------------------------------------------------HHS TTS S EEEE SSHH: ExpBur :--------------------------------------------------------------------------------ebbeeeeebbbbbbbbbeee: queryA 298:LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTS: 396 :** *** * * ** ***** ** * ****** * ** * * * * : 3rrm_A_1 87:LARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT-: 178 SecStr :HHHHHHHHHHHHTSSS--- EEEESTTSS TT ---- B SEEEE HHHHHHHHHTT B TT EEEE HHHHHHSTTHHHHHHHHHHHS TTS-: ExpBur :bbeebbeebeebbeeb---ebeeebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbebbebeeeeebbebbeebeeebeeeb-: Contact : b queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : * *** * ** * * * * *: 3rrm_A_1 179:-----QLVLFSATFAD-AVRQYAKKIVPNANTLELXXXXVNVDAIKQLYMDCKNEADKF----------------------------------DVLTELY: 238 SecStr :-----EEEEE S H-HHHHHHHHHS S EEEE ---- GGGEEEEEEE SSTTHHH----------------------------------HHHHHHT: ExpBur :-----bbbbbbeeeee-ebeebbeebbeebeebee----eeeeebbbbbbebeeeeebe----------------------------------ebbbebb: Contact : b queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD--: 594 : * * *** ** * * ** * **** ** * * ** * ** * * * ** : 3rrm_A_1 239:GVMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVS--ILHGDLQTQERDRLIDDFREGRSKVLITTNXXXXXXDIPTVSMVVNYDLPTLA: 324 SecStr :TTS -----SSEEEE SSHHHHHHHH-------HHHHHHT EE--EE SSS HHHHHHHHHHHHTTS SEEEE ------ BSEEEESS B T: ExpBur :ebbee-----eebbbbbeeeebbeebe-------eebeeeeeebb--bbbeebeeeeeeebbebbeeeebebbbbbe------ebeebebbbbbebbeee: Contact :bbbbb b bbbb bbb b queryA 595:----EKQNYVHRIGRVGRAERMGLAISLV: 619 : * ***** ** * * *** *: 3rrm_A_1 325:NGQADPATYIHRIGRTGRFGRKGVAISFV: 353 SecStr :TS B HHHHHHHHHTBS SS EEEEEEE: ExpBur :eeebbbeebeebbbbbebeeeebbbbbbb: Contact : b |