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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-dependent RNA helicase DBP5 :DBP5_YEAST | |
2 | b | E 1 (A) | non-polymer(BEF) | BERYLLIUM TRIFLUORIDE ION | 48T(S) 49G 52K 371E 408A 578G 605R 608R (identity: 87.5 %/35.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3pew_A_1 identity=35.0% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * ** * * ** ** * * *** *** : 3pew_A_1 6:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------: 66 SecStr :SSTTS HHHHHHHHHTT S HHHHHHHHHHH SS EEEE TTS HHHHHHHHHH---------------------------------------: ExpBur :bbeebebeeebbebbeebeeeebbebbeebbeebbeeeeebbbbbbebbeebebbbbbbbb---------------------------------------: Contact : bb b queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 3pew_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292 : * * : 3pew_A_1 67:-------------------------------------------------------------------------------------TRVNPEDASPQAICL: 81 SecStr :-------------------------------------------------------------------------------------HH TTS S EEEE: ExpBur :-------------------------------------------------------------------------------------ebbeeeeebbbbbbb: queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391 : ****** *** * * ** ***** ** * ****** * ** * * : 3pew_A_1 82:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 174 SecStr : SSHHHHHHHHHHHHHHTTTS--- EEEESTTSS TTS---- B SEEEE HHHHHHHHHTT B TT EEEEETHHHHHHSTTHHHHHHHHHHHS: ExpBur :bebbbbbebbbebbeebbeeb---ebebebbbeeeeeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbbeeeebbeebbebeeeb: Contact : b queryA 392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491 :* * * *** * ** * * * : 3pew_A_1 175:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----------------------------------DV: 233 SecStr : TT ------EEEEEES H-HHHHHHHHHS S EEE GGGSS TTEEEEEEE SSTTHHH----------------------------------HH: ExpBur :eeeb------bbbbbbbbbee-ebbeebeebbeebbebebeeeebbbeebebbebebeeeeebb----------------------------------eb: Contact : b queryA 492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591 :* * * * *** ** * * ** * **** ** * * ** * * ****** * * * : 3pew_A_1 234:LTELYGVMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 319 SecStr :HHHHHHHHTS-----SEEEEE S HHHHHHHH-------HHHHHTT EE--E TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS: ExpBur :bbebbebbee-----ebbbbbbeeeeebeebe-------eebeeeeeebbb--bbeeeebeebeebbeebeeeebebbbbbeebbbbbebeebbbbbbbb: Contact : b queryA 592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619 :** * ***** ** * * *** *: 3pew_A_1 320:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 353 SecStr : B TTSSB HHHHHHHHTTSS TT EEEEEEE: ExpBur :bbeeeeeebbbebbbbbbbbbbbeeeebbbbbbb: Contact : b b |