[pdbjlvh2]Protein Model on 3ly5_A_1_E

Protein Model on 3ly5_A_1_E_1 (TEMPLATE: 3ly5 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [211 aa]	ATP-dependent RNA helicase DDX18 :DDX18_HUMAN
2	b		E 1 (A)	non-polymer(MG)	MAGNESIUM ION	46A 52K 371E 406C(F) 407S 408A (identity: 83.3 %/38.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3ly5_A_1 identity=38.5%

queryA        15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114
                : *  **     * **  **   * * * * ** ****** ** **                                                       :
3ly5_A_1      67:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 116
SecStr          :HHHHHTT  B  HHHHHHHHHHHHT   EE   TTS HHHHHHHHHHHHH--------------------------------------------------:    
ExpBur          :bbbeebeeeebeebbeebbbebbeebbbebebeeeeebbbbbbbbbbbbb--------------------------------------------------:    
Contact         :                               b     b                                                              

queryA       115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214
                :                                                                                                    :
3ly5_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                   * * *    **  * **** **    *      :
3ly5_A_1     116:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 153
SecStr          :--------------------------------------------------------------HHHTT  GGG   EEEE SSHHHHHHHHHHHHHHTTT :    
ExpBur          :--------------------------------------------------------------beeeebeeeebbbbbbbbbbeebbeebeeebbebbeeb:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT: 409
                :        ** **         * **  * * **** **    *          ** ****  *  *            *       * *    ***:
3ly5_A_1     154:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT: 241
SecStr          : S EE---EE SSS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE SHHHHHHTT HHHHHHHHHHS S------SSEEEEE SS:    
ExpBur          :ebeeb---ebbbeeeeeebeebbeebbbbbbbbbebbbebeeebeebebeebebbbbbbbbebbeeeeeeebeebbeebee------ebbbbbbbee:    
Contact         :                                                          b                                  bbb

Protein Model on 3ly5_A_1_E_1 (TEMPLATE: 3ly5 )

Input Residue Numbers for Focused Sites