Protein Model on 3iuy_A_1_C_1 (TEMPLATE: 3iuy )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [213 aa] Probable ATP-dependent RNA helicase DDX53 :DDX53_HUMAN
2 b C 1 (A) non-polymer(AMP) ADENOSINE MONOPHOSPHATE 22W(I) 24L(K) 25P 26T 29Q 48T 49G 50S(T) 51G 52K 53T 54G(L) 304N(H) 308Q(E) (identity: 57.1 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3iuy_A_1 identity=36.5%
queryA        11:PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC: 110
                :*           * ** **    * ** * *    * ** ***     *                                                   :
3iuy_A_1      29:PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMP---------------------------------------------------:  77
SecStr          :HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHH---------------------------------------------------:    
ExpBur          :eebbebbeeeeeeebeebbbbbbbbbeeebbbbbbbeeeeebbbbbbbb---------------------------------------------------:    
Contact         :           b bbb  b                  bbbbbbb                                                        

queryA       111:CQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK: 210
                :                                                                                                    :
3iuy_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       211:DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------------NAPKALIVEPS: 295
                :                                                                                         * *  *   * :
3iuy_A_1      78:--------------------------------------------------------------------------GFIHLDXXXXXXXXXNGPGMLVLTPT: 103
SecStr          :--------------------------------------------------------------------------HHHHH ---------   SEEEE SS:    
ExpBur          :--------------------------------------------------------------------------bbbeee---------eebbbbbbbbe:    

queryA       296:RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM: 387
                :****   *       **     *    * *      *      ****   ***** **      **     ** ****  *       *   :
3iuy_A_1     104:RELA---LHVEAECSKY-SYKGLKSICIYGXXXXXXQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI: 191
SecStr          :HHHH---HHHHHHHHHH-  TT  EEEE  ------ HHHHHS  SEEEE HHHHHHHHHTT    TT  EEEE  HHHHHHTT HHHHHHH:    
ExpBur          :eebb---eebbeebeeb-ebeebeebbbee------eeeebebebebbbbbbeebbebeeeeebebeebbbbbbbebbbbeeeebbeebeeb:    
Contact         :        b   b                                                                                       


Input Residue Numbers for Focused Sites

ex) 2,15,123