[pdbjlvh2]Protein Model on 2vsx_A_1_D

Protein Model on 2vsx_A_1_D_1 (TEMPLATE: 2vsx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [366 aa]	ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST
2	b		D 1 (F)	polymer(polypeptide(L)) [237 aa]	EUKARYOTIC INITIATION FACTOR 4F SUBUNIT P150 :IF4F1_YEAST	355S(Q) 356T(R) 357G(R) (identity: 0.0 %/34.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2vsx_A_1 identity=34.7%

queryA        25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
                :*  **   *  *  * ***  *  * **** ***   *      *  *                                                    :
2vsx_A_1      45:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------:  92
SecStr          :  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHHH  TT  S  ----------------------------------------------------:    
ExpBur          :beebbbebbbbbbeeebbbbbbeeeeebebbbbbbbbbebeeeeebbb----------------------------------------------------:    

queryA       125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
                :                                                                                                    :
2vsx_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324
                :                                                             ** **   * **** *            *         *:
2vsx_A_1      90:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 125
SecStr          :-------------------------------------------------------------S  EEEE SSHHHHHHHHHHHHHHTSSS ---  EEEE :    
ExpBur          :-------------------------------------------------------------bbbbbbbbbeeebbeebbebbeebbeebe---bebebbe:    

queryA       325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424
                :           *     ********  *                *****  ** *    *       *  *      **   ***    **     * * :
2vsx_A_1     126:XXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 217
SecStr          :----------  SS -SEEEE HHHHHHHHHTT S  TT  EEEEESHHHHHHTT HHHHHHHHHHS TT ------EEEEEES   H-HHHHHHHHH S:    
ExpBur          :----------ebeeb-bbbbbbbbebbebbeeeebebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbeebee-ebeebbeebbe:    
Contact         :                              bbb                                                                   

queryA       425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524
                : *     *             * *                                  *   *    *     *         ** *** *      *  :
2vsx_A_1     218:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 278
SecStr          :S EEEE       STTEEEEEEEEESG-------------------------------GGHHHHHHHHHHHS  --------S EEEEESSHHHHHHHHH:    
ExpBur          :ebbebebeeeeeebeebebbeeebeee-------------------------------eebbeebbebeeebeb--------ebbbbbbeeeebbeebbe:    

queryA       525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622
                :               *       *    **      *  *  * ** **  *****   *  ***  **  * ** *****       * **  *  *:
2vsx_A_1     279:KL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRXXXXXXKGVAINFVTNE: 367
SecStr          :HH---------HHTT  EEEE TTS HHHHHHHHHHHTTTS SEEEEESGGGSS    S  EEEESS  SSGGGGHHHH  ------ EEEEEEEESS:    
ExpBur          :eb---------eeeeeebbbbbeebeeeeeeebbeebeeeebebbbbbbebbeebeeeebebbbbbbbbeeeebbeebbbe------eeebbbbbbee:

Protein Model on 2vsx_A_1_D_1 (TEMPLATE: 2vsx )

Input Residue Numbers for Focused Sites