Protein Model on 2vsx_A_1_B_1
(TEMPLATE: 
2vsx
)Protein Model on 2vsx_A_1_B_1
(TEMPLATE: 2vsx
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | 296R 297E 348G 349R 352D 356T(R) 378Q(S) 379G 382D(E) 383F(Q) 516K(R) 520D(E) 546H(Y) 548D 549R(L) 550K(P) 552H(Q) 553E 556Q(T) 557N(I) 560R(E) 565D(S) (identity: 36.4 %/34.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2vsx_A_1 identity=34.7% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
:* ** * * * *** * * **** *** * * * :
2vsx_A_1 45:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 92
SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH TT S ----------------------------------------------------:
ExpBur :beebbbebbbbbbeeebbbbbbeeeeebebbbbbbbbbebeeeeebbb----------------------------------------------------:
queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
: :
2vsx_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324
: ** ** * **** * * *:
2vsx_A_1 90:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 125
SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTSSS --- EEEE :
ExpBur :-------------------------------------------------------------bbbbbbbbbeeebbeebbebbeebbeebe---bebebbe:
Contact : bb
queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424
: * ******** * ***** ** * * * * ** *** ** * * :
2vsx_A_1 126:XXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 217
SecStr :---------- SS -SEEEE HHHHHHHHHTT S TT EEEEESHHHHHHTT HHHHHHHHHHS TT ------EEEEEES H-HHHHHHHHH S:
ExpBur :----------ebeeb-bbbbbbbbebbebbeeeebebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbeebee-ebeebbeebbe:
Contact : bb b b bb bb
queryA 425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524
: * * * * * * * * ** *** * * :
2vsx_A_1 218:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 278
SecStr :S EEEE STTEEEEEEEEESG-------------------------------GGHHHHHHHHHHHS --------S EEEEESSHHHHHHHHH:
ExpBur :ebbebebeeeeeebeebebbeeebeee-------------------------------eebbeebbebeeebeb--------ebbbbbbeeeebbeebbe:
Contact : b b
queryA 525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622
: * * ** * * * ** ** ***** * *** ** * ** ***** * ** * *:
2vsx_A_1 279:KL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRXXXXXXKGVAINFVTNE: 367
SecStr :HH---------HHTT EEEE TTS HHHHHHHHHHHTTTS SEEEEESGGGSS S EEEESS SSGGGGHHHH ------ EEEEEEEESS:
ExpBur :eb---------eeeeeebbbbbeebeeeeeeebbeebeeeebebbbbbbebbeebeeeebebbbbbbbbeeeebbeebbbe------eeebbbbbbee:
Contact : b bbb bb bb b b
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[assembly_id:1]
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