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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN | |
2 | b | C 1 (T) | polymer(polypeptide(L)) [9 aa] | PROTEIN CASC3 :CASC3_HUMAN | 361L(T) 385N(Y) 388H(Y) 389N(R) 390Q(Y) 391I(L) 392P 393Q(P) 395T 421K 422I(F) (identity: 27.3 %/33.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2j0u_A_1 identity=33.0% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** ** * * * : 2j0u_A_1 2:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQ------------------------------: 71 SecStr : SGGG HHHHHHHHHTT S HHHHHHHHHHHHT EEEE SSTTTTHHHHHHHHHH SSS S ------------------------------: ExpBur :bbeebebeeebbbbbeeeebeebeeebbebbebbeeeebbbbbeeeeebebbbbbbbbbeebeeeeeebb------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 2j0u_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302 : *** * **** * : 2j0u_A_1 71:-------------------------------------------------------------------------------------QALILAPTRELAVQV: 85 SecStr :------------------------------------------------------------------------------------- EEEE S HHHHHHH: ExpBur :-------------------------------------------------------------------------------------bbbbbbbebeebeeb: queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : * *** * * * ***** * * ******* * * * * * *: 2j0u_A_1 86:QKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------Q: 176 SecStr :HHHHHHHHTTTT--- EE S HHHHHHHHHT SEEEE HHHHHHHHHTS S TT EEEETTHHHHHTTT HHHHHHHHHTS TT ------E: ExpBur :eebbeebbeebe---ebbbbbeeeeeeeebeebbeeebbbbbbbbebbbebbeeebbebeebebbbbbebbbbbeeeebeebeebeeebeeeb------b: Contact : b b bbbbbb b queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502 :* **** * * * * * * ** * * * : 2j0u_A_1 177:VVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEW-------KFDTLCDLYD: 236 SecStr :EEEEES - HHHHHHHHHH SS EEE SS STT EEEEEE -------- S------------------------TTS-------HHHHHHHH : ExpBur :bbbbbeeb-eeebbeebeebbebbbbbbeeeeeebbeebbbebbeb--------eb------------------------eee-------bbebbeeeee: Contact : bb queryA 503:EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR: 602 : ** *** ** * * * *** ** * * * ** *** ** * * ** ** * **: 2j0u_A_1 237:XXXITQAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARXXDVPQVSLIINYDLPNNRELYIHR: 327 SecStr :--- EEEE SSHHHHHHHHHHH---------HHSS EEEE SSS HHHHHHHHHHHHHTS SEEEE STT -- SEEEESS SSHHHHHHH: ExpBur :---eebbbbbbeebebbeebbebb---------eeeebebbebbeebeeeeeeebbebbeeeebebbbbbbebbe--bebeeebbbbbbbbeeeeebbeb: queryA 603:IGRVGRAERMGLAISLVATEKEKV: 626 :*** ** * * * * *: 2j0u_A_1 328:IGRSGRYGRKGVAVNFVKNDDIRV: 351 SecStr :S SSSS EEEEEE GGGHHH: ExpBur :beebbeebbeebbbbbbeeebeee: |