Protein Model on 2db3_H_1_D_1
(TEMPLATE: 
2db3
)Protein Model on 2db3_H_1_D_1
(TEMPLATE: 2db3
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | H 1 (D) | polymer(polypeptide(L)) [420 aa] | ATP-dependent RNA helicase vasa :VASA_DROME | |
| 2 | b | D 1 (H) | polymer(polyribonucleotide) | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | 294P 295S(T) 296R 325G 326G 346T 347P 348G 349R 352D 374G(R) 380Y(F) 514R(E) 515T 516K 546H 547G 554R 572T 573D(S) 574V (identity: 76.2 %/33.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2db3_H_1 identity=33.8% |
queryA 287:PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR: 386
:* ** * **** * * * * ** * * * * ***** * * ** ****** * * * *:
2db3_H_1 130:PQVVIVSPTRELAIQIFN---EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRR: 226
SecStr : SEEEE SSHHHHHHHHH---HHHHHTTTSS EEEE SSS HHHHHHHHHT SEEEE HHHHHHHHHHTSS TT EEEEETHHHHTSHHHHHHHHH:
ExpBur :bbbbbbbbbebbbbbbbe---bbbbbbbeeebebbbbbbebebebbbeebeebbbbbbbbbebbbebbeeeebbbeebbbbbbbbbbebbeeeeeeebee:
Contact : bbb bb bbbb b b b
queryA 387:MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS: 486
: * *** * * ** * *:
2db3_H_1 227:IMTHVTMRPEH----QTLMFSATFPE-EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR-------------------------------S: 290
SecStr :HHT TTS SS ----EEEEEES H-HHHHHHGGG SS EEEEESSTT TTEEEEEEE GGGHH-------------------------------H:
ExpBur :bbeeebbeeee----bbbbbbbbbee-ebbeebeebbeeebbbbbeeebebbebbebebeebeeeebe-------------------------------e:
queryA 487:EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY: 586
: * ** * * * ** * * * **** * * * ** * ** * ** ** ** :
2db3_H_1 291:KLIEILS----------EQADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH: 371
SecStr :HHHHHHH----------H TTEEEE S HHHHHHHHHHHHTT---------T EEEE TTS HHHHHHHHHHHHTTS EEEE GGGSSS TT E:
ExpBur :bbbebbe----------eebebbbbbbeeeeebeebbebbeee---------ebebbbbbeeeebeebbebbebbeeeeeebbbbbebbbbbbebeebeb:
Contact : bbb bb b bbb
queryA 587:VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
:*** * ******* ** * * * ** :
2db3_H_1 372:VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR: 410
SecStr :EEESS SSHHHHHHHHTTSS TT EEEEEEE TTT H:
ExpBur :bbbbbbbeebebbbbbbbbbbbbbeebebbbbbbeeebe:
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[assembly_id:4]
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