#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [926 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | G 1 (T) | polymer(polyribonucleotide) | Template RNA | 408Q 500K 501S 507N 511K 541Q 543N 544L 557V 558A 559G 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 686T 687T 689Y 864I 911N 914R 915Y 920F 924M (identity: 100.0 %/100.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8sq9_A_1 identity=100.0% |
queryA 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 :****************************************************************************************************: 8sq9_A_1 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 SecStr : HHHHHHHSTTS EE SS SSS EEEEEEEEEE SS EEEEEEEEEEEEEEEEE SSS EEEEEEEEEE HHHHHHHHHHHHHHTT TTB EE EE: ExpBur :eeebbeebbeeeebebeeebebeeebeeebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbbbeeeebeebeebbeebeebebbbebebbe: queryA 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 :****************************************************************************************************: 8sq9_A_1 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 SecStr :EEETTEEEEEEEEEEE SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS GGGGTSSSTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEE: ExpBur :beeeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbeebeebbebbbebbeebbebbebbbebbebbeebbbbb: queryA 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 :****************************************************************************************************: 8sq9_A_1 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 SecStr :E GGGBBTTS B TT EE STT EE SHHHHHHHHHHHHTTTTGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG S: ExpBur :bbbbbbbbbebbbbbbeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeebeeeeeeeebeeeeeebbebbeebbeebbeebebebbbbbeebee: queryA 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 :****************************************************************************************************: 8sq9_A_1 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 SecStr :HHHHHHHHHHHHHHTTSS GGGSEEEEE EETTEE EEEEEEETTTEEEE S SBS HHHHHHHTTSHHHHHHHSEE TT SS EEEESSS: ExpBur :bbbbbbbbbbbbbbbebbbeebbbebeeebebeeeebebbbbbbbebbbbbebeeeeeeeeebeeeeebbbebbbbebbeeeeebebeebebebebbeee: queryA 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 :****************************************************************************************************: 8sq9_A_1 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 SecStr :S B EE HHHHHHHHHTT S TT S B B S SHHHHHHHHTT HHHHHHHHHHHGGGGSS GGG S S SB : ExpBur :eeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbbbbeebebbbbebeebebeeeeeebb: Contact : b bb queryA 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 :****************************************************************************************************: 8sq9_A_1 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 SecStr :TTGGGT BHHHHHHHS HHHHHHHHHHTTSS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHT SSSSB TT STTTHHHHHHH: ExpBur :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeebbebebbbbbbbbbbbebbbbebbeebeeeeebbbbbebebeebbbbebbe: Contact : b b b bb bbb b b b b b bb queryA 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 :****************************************************************************************************: 8sq9_A_1 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 SecStr :HHTTT SSEEEEEEE TTHHHH HHHHHHHHHHHGGG TTT HHHHHHHHHHHHHHHTS EEE SSEEEE SS TTSTTHHHHHHHHHHHHHHHHH: ExpBur :ebbeebeebebbbbebebbbbbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbbebebeebbbbbbbbbbbbbbb: Contact : bbbbbb b queryA 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 :****************************************************************************************************: 8sq9_A_1 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 SecStr :HHHHHTS SSS HHHHHHHHHHHHHHHT SS HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHHS TTT EEES: ExpBur :bbbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbeee: queryA 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 :****************************************************************************************************: 8sq9_A_1 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 SecStr : TTS S BTTBEEEEEESSS EEEEEE HHHHHHHHHEESSSGGG TTT SHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS: ExpBur :eeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeebeebeeee: Contact : b queryA 904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :**************************: 8sq9_A_1 904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929 SecStr : SGGGGGGSSHHHHGGGSS : ExpBur :eeeeeeeebeebbeeebbeebbeeee: Contact : b bb b b |