#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [801 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [62 aa] | Non-structural protein 7 :R1AB_SARS2 | 410V 411K 412P 415F 442F 443A 444Q 445D 552N (identity: 100.0 %/97.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xqb_A_1 identity=97.4% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------: 117 :******** ********* : 6xqb_A_1 32:VYRAFDIYXXXVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX: 64 SecStr : EEEEEE --- EEEEEE --------------------------------------------------------------------------------: ExpBur :eebbbbee---ebbbbeeee--------------------------------------------------------------------------------: queryA 118:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 163 : **********************************************: 6xqb_A_1 65:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 164 SecStr :------------------------------------------------------ SSBHHHHHHHHSS BTTB HHHHHHHHHTTS GGGGGSTTTT: ExpBur :------------------------------------------------------eebeebbbbbbbbbbbbebeebebbeebbeebebbeeeebeeeebe: queryA 164:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 263 :************************************************************** **********************************: 6xqb_A_1 165:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTXXXXGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 264 SecStr : SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE STT BTT S EE ---- THHHHHHSGGGTTTTGGGGGGBGGG TTS: ExpBur :bbbebeebeebbeebbeebbbbbeebbebbbebeeebbebebbbbebbbebebeeeeebeee----eebebbbbbbbbbbbbbbbebbebbebeeeeeee: queryA 264:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 363 :****************************************************************************************************: 6xqb_A_1 265:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 364 SecStr : B SS HHHHHHHHHHH TT SS SSGGG SSHHHHHHHHHHHTGGGSSS TTT EEEEEEEEESSSEEEEEEEEEETTTEEEE SS SEE: ExpBur :eeeeeeeeeeebeebbeebbbebbebbeeeebbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeee: queryA 364:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 463 :****************************************************************************************************: 6xqb_A_1 365:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 464 SecStr :SS HHHHHHHHS HHHHHTTS SS SS EEEESSSS HHHHHHHHTTS S TT S B TTHHHHHHGGGGG : ExpBur :eeeeebbebbbbbbbbeebeeeeebebeebebebebbeeeeeeeeeeeeeeebeebeebbeeeebbeeebebeeebebeeeebebebebbebbebbbebb: Contact : bbb b bbbb queryA 464:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 563 :****************************************************************************************************: 6xqb_A_1 465:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 564 SecStr : HHHHHHHHHHHHHHTTT GGG SS TGGGTT HHHHHHHS HHHHHHHHHHHTTS EEEEE BSSS EEE HH: ExpBur :bbbbbbbbbbbbbbbbbeebeebbbeeeebeeeebeeebbbbbeeeeebeebeeebeeeebeebbebbbebbbbbbbbbeeeeebeeeeebebebebbbb: Contact : b queryA 564:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 663 :****************************************************************************************************: 6xqb_A_1 565:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 664 SecStr :HHHHHHHHHTTTTHHHHT TTSSB TT STTTHHHHHHHHHHSS SSEEEEE SSHHHH HHHHHHHHHHTTTT TTT HHHHHHHHHHHHHHTT: ExpBur :bbbbbbbbbbebbebbbeeeebbbbbebebeebebbebbeebbeebeeeebbbbebeeebbbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbb: queryA 664:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 763 :*********************************************** *************************************************: 6xqb_A_1 665:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTXXXXIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 764 SecStr :S EEESSSEEEE TT TTHHHHHHHHHHHHHHHHHHHHHHH ---- SHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHEEEEEETTEEE: ExpBur :bbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbbbbbbbbbe----eeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbebebbb: queryA 764:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 863 :****************************************************************************************************: 6xqb_A_1 765:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 864 SecStr :EEEEHHHHHHTSS HHHHHHHHHHHTS TTT EEES TTS S SSS EEEEEEETTEEEEEEE HHHHHHHHHS SSSTTT STTHHHHHHHHH: ExpBur :bbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbeeebeeeebbbbebebbebbbbbbbbeeeeeeeeeebeebbbebb: queryA 864:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPE: 919 :******************************** **************: 6xqb_A_1 865:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXMLTNDNTSRYWEPE: 920 SecStr :HTTGGGGGSS HHHHHHHHHHHHHHHHHHHH ---------- SSHHHHHTTS : ExpBur :eebbbbeeeeeebebebbebbbebbeebeeee----------eeeeeebebebeee: |