Protein Model on 8vsg assembly_id=1
(TEMPLATE: 
8vsg
assembly_id:1
)Protein Model on 8vsg assembly_id=1
(TEMPLATE: 8vsg
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 3 | c | C 1 (A) | non-polymer(BTB) | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | 52P 53N 54Y 55E (identity: 100.0 %/100.0 %) | |
| 4 | d | D 1 (A) | non-polymer(A1AD0) | (1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide | 41H 49M 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E 172H 188R 189Q 190T (identity: 100.0 %/100.0 %) | |
| 5 | e | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 15G 16C 17M 18V 31W 71G 97K (identity: 100.0 %/100.0 %) | |
| 6 | f | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 7 | g | G 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 223F 224T (identity: 100.0 %/100.0 %) | |
| 8 | h | H 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 222R 223F (identity: 100.0 %/100.0 %) | |
| 9 | i | I 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 12K 97K 98T 99P (identity: 100.0 %/100.0 %) | |
| 10 | j | J 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 271L 276M 285A 286L 287L (identity: 100.0 %/100.0 %) | |
| 11 | k | K 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 81S 88K 90K (identity: 100.0 %/100.0 %) | |
| 12 | l | L 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 116A 118Y 123S 141L (identity: 100.0 %/100.0 %) | |
| 13 | m | M 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 5K 7A 126Y 127Q (identity: 100.0 %/100.0 %) | |
| 14 | n | N 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 105R 181F 183G (identity: 100.0 %/100.0 %) | |
| 15 | o | O 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 16 | p | P 1 (B) | non-polymer(A1AD0) | (1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide | ||
| 17 | q | Q 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 18 | r | R 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S 124G (identity: 100.0 %/100.0 %) | |
| 19 | s | S 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 20 | t | T 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8vsg_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
8vsg_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHHT GGG EEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeebebeebebbbbbbbbeebebbbbbbeeebbbbebbbbeeeebeebebeebbeebeeeebebebeeeebebebeeeeebbbebebeeebeeebe:
Contact :bb bbbbbbbbi beeee e d d cccc e k k k eii
Contact : mfff i
Contact : m
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
8vsg_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeeebbbbbbebebbeebebeeeebebeebeeb:
Contact : n l l bbbbbbb bbbbbdddd dddb b b n n ddd
Contact : lr mf dd d d
Contact : r m l
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
8vsg_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHHHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHT:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeebbeebeebbeebebebeebbbbbbbbbeeebeeeebeebeebebbbbbebbeebb:
Contact : hgg j j b bbj b fbb
Contact : h jj
queryA 301:SGVTF: 305
:*****:
8vsg_A_1 301:SGVTF: 305
SecStr :TT :
ExpBur :eeeee:
Contact :bbbbb
|
[help]