Protein Model on 8okn assembly_id=1
(TEMPLATE: 
8okn
assembly_id:1
)Protein Model on 8okn assembly_id=1
(TEMPLATE: 8okn
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | |
| 3 | c | C 1 (A) | non-polymer(83W) | tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2S)-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate | ||
| 4 | d | D 1 (A) | non-polymer(CL) | CHLORIDE ION | ||
| 5 | e | E 1 (A) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 6 | f | F 1 (A) | non-polymer(NA) | SODIUM ION | ||
| 7 | g | G 1 (A) | non-polymer(NA) | SODIUM ION | ||
| 8 | h | H 1 (B) | non-polymer(83W) | tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2S)-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate | 49M 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E 167L 168P 172H 188R 189Q 190T 192Q (identity: 100.0 %/100.0 %) | |
| 9 | i | I 1 (B) | non-polymer(MPD) | (4S)-2-METHYL-2,4-PENTANEDIOL | 132P 133N 196T 198T 240E (identity: 100.0 %/100.0 %) | |
| 10 | j | J 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 256Q 300C (identity: 100.0 %/100.0 %) | |
| 11 | k | K 1 (B) | non-polymer(NA) | SODIUM ION | 221N 223F 263D 266A (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:8okn_B_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
8okn_B_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG HHHHHS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbebbbbeeebbeebebeebbeebeeeebebebeeeebebeeeebeebbbebebeeebeeebe:
Contact :aa aaaaaaaa a h
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
8okn_B_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeeebbbbbbebebbeebebeeeebebeebeeb:
Contact : aaaaaaa ii aaaaahhhh hhhahh a a hhh h i i
Contact : hh h h
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
8okn_B_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeebbeebeebbeebebebeebbbbbbebbeeebeeeebeebeebebbbbbebbebbe:
Contact : k k i j k k aeaa a aa
Contact : ee j
queryA 301:SGVTFQ: 306
:******:
8okn_B_1 301:SGVTFQ: 306
SecStr :HT :
ExpBur :eeeeee:
Contact :aaaaa
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