Protein Model on 8okk assembly_id=1
(TEMPLATE: 
8okk
assembly_id:1
)Protein Model on 8okk assembly_id=1
(TEMPLATE: 8okk
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T 305F 306Q (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | |
| 3 | c | C 1 (A) | non-polymer(83F) | tert-butyl-N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate | ||
| 4 | d | D 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 5 | e | E 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 6 | f | F 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 301S (identity: 100.0 %/100.0 %) | |
| 7 | g | G 1 (A) | non-polymer(FMT) | FORMIC ACID | ||
| 8 | h | H 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 9 | i | I 1 (A) | non-polymer(FMT) | FORMIC ACID | 123S (identity: 100.0 %/100.0 %) | |
| 10 | j | J 1 (A) | non-polymer(FMT) | FORMIC ACID | ||
| 11 | k | K 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 118Y (identity: 100.0 %/100.0 %) | |
| 12 | l | L 1 (A) | non-polymer(NA) | SODIUM ION | ||
| 13 | m | M 1 (A) | non-polymer(NA) | SODIUM ION | ||
| 14 | n | N 1 (A) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 15 | o | O 1 (B) | non-polymer(83F) | tert-butyl-N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate | 41H 49M 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E 172H 188R 189Q 190T 192Q (identity: 100.0 %/100.0 %) | |
| 16 | p | P 1 (B) | non-polymer(ACT) | ACETATE ION | 253L 256Q 300C 301S (identity: 100.0 %/100.0 %) | |
| 17 | q | Q 1 (B) | non-polymer(ACT) | ACETATE ION | 271L 287L (identity: 100.0 %/100.0 %) | |
| 18 | r | R 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 295D 298R (identity: 100.0 %/100.0 %) | |
| 19 | s | S 1 (B) | non-polymer(MPD) | (4S)-2-METHYL-2,4-PENTANEDIOL | 132P 196T 198T 240E (identity: 100.0 %/100.0 %) | |
| 20 | t | T 1 (B) | non-polymer(ACT) | ACETATE ION | 15G 17M 18V 31W 70A 71G 97K (identity: 100.0 %/100.0 %) | |
| 21 | u | U 1 (B) | non-polymer(FMT) | FORMIC ACID | 4R 5K (identity: 100.0 %/100.0 %) | |
| 22 | v | V 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 100K 101Y (identity: 100.0 %/100.0 %) | |
| 23 | w | W 1 (B) | non-polymer(FMT) | FORMIC ACID | ||
| 24 | x | X 1 (B) | non-polymer(NA) | SODIUM ION | 221N 223F 263D 266A (identity: 100.0 %/100.0 %) | |
| 25 | y | Y 1 (B) | non-polymer(CL) | CHLORIDE ION | 223F 224T (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:8okk_B_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
8okk_B_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG HHHHHS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeebebeebeebbbbbebeeeebbbbbbeebbbbbebbbbeeebbeebebeebbeebeeeebebbbeeeebebeeeebeebbbebebeeebeeebe:
Contact :aa aaaaaaaa at tt t o o tt t v
Contact : uurrr
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
8okk_B_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebebeebeeb:
Contact :v k aaaaaaa s aaaaaoooo oooa a a ooo o s s
Contact : i r oo o o
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
8okk_B_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHS HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeebbeebeebeeebebebeebbbbbbebbeeebeeeebeebeebebbbbbebbeebe:
Contact : x xy s p p x x q anaaq a r raa
Contact : y nn p
queryA 301:SGVTFQ: 306
:******:
8okk_B_1 301:SGVTFQ: 306
SecStr :HT :
ExpBur :eeeeee:
Contact :aaaaaa
Contact :f
Contact :p
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