Protein Model on 8a4q assembly_id=1
(TEMPLATE: 
8a4q
assembly_id:1
)Protein Model on 8a4q assembly_id=1
(TEMPLATE: 8a4q
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | 1S 2G 3F 4R 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 172H 283G 285A 286L 290E 298R 299Q 300C 301S 302G 303V 304T 305F 306Q (identity: 100.0 %/100.0 %) | |
| 3 | c | B 1 (A) | non-polymer(V9R) | ~{tert}-butyl ~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate | 27L 41H 46S 49M 140F 141L 142N 143G 144S 145C 163H 166E (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (A) | non-polymer(V9R) | ~{tert}-butyl ~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate | 1S (identity: 100.0 %/100.0 %) | |
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 9 | i | E 1 (A) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (A) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8a4q_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
8a4q_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbebbbeeeebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :bbbb bbbbbb b c c c c eee
Contact :d
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
8a4q_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeebbbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : b bbbbbbbb bbbbbcccc c b b
Contact : cc c
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
8a4q_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebeebeeeebeebeebbeeeebebeebbbbbbebbeeebeeeebeebeebbbbbbbebbebbe:
Contact : bibb b bbb
Contact : jii
Contact : jj
queryA 301:SGVTFQ: 306
:******:
8a4q_A_1 301:SGVTFQ: 306
SecStr :HT :
ExpBur :eeeebe:
Contact :bbbbbb
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