Protein Model on 7nbt assembly_id=1
(TEMPLATE: 
7nbt
assembly_id:1
)Protein Model on 7nbt assembly_id=1
(TEMPLATE: 7nbt
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (AAA) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | |
| 2 | b | A 2 (AAA) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase nsp5 :R1AB_SARS2 | 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 172H 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 3 | c | B 1 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 5 | e | C 1 (AAA) | non-polymer(U7W) | 2-(benzotriazol-1-yl)-1-[(4~{S})-4-methyl-6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-yl]ethanone | 41H 49M 140F 141L 142N 144S 145C 163H 164H 165M 166E 187D 188R 189Q (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (AAA) | non-polymer(U7W) | 2-(benzotriazol-1-yl)-1-[(4~{S})-4-methyl-6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-yl]ethanone | 1S (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 8 | h | D 2 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 9 | i | E 1 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 84N 85C (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (AAA) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7nbt_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
7nbt_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG GGGGGS HHHHHHT GGG EEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeebbeebebeebbeeeeeeebebebeeeebebebeeeeebbbebebeeebeeebe:
Contact :bbbbbbbbbbb b e e ggg ii
Contact :f ccc
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:********* ******************************************************************************************:
7nbt_A_1 101:YKFVRIQPGXTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE - EEEEEEETTEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B :
ExpBur :eeeeebeee-bbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbebeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : b bbbbbbb bbbbbe ee eeeb b eee
Contact : d c ee e
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
7nbt_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbebeeeebeeeeebeeeebeebbeeeebeebeeeebeebeebbeeeebebeebbbbbbebbeeebeeeebeebeebebbbbbebbebee:
Contact : b bb b cbb
queryA 301:SGVTF: 305
:*****:
7nbt_A_1 301:SGVTF: 305
SecStr :HT :
ExpBur :eeeee:
Contact :bbbbb
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