Protein Model on 7gnm assembly_id=1
(TEMPLATE: 
7gnm
assembly_id:1
)Protein Model on 7gnm assembly_id=1
(TEMPLATE: 7gnm
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase :R1AB_SARS2 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 172H 283G 285A 286L 290E 298R 299Q 301S (identity: 100.0 %/100.0 %) | |
| 3 | c | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 298R 299Q (identity: 100.0 %/100.0 %) | |
| 4 | d | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 14E 15G 16C 17M 70A 71G (identity: 100.0 %/100.0 %) | |
| 5 | e | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 166E 168P 188R 189Q 190T 192Q (identity: 100.0 %/100.0 %) | |
| 6 | f | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 7 | g | G 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 17M 19Q 69Q 70A 71G 119N 120G 121S (identity: 100.0 %/100.0 %) | |
| 8 | h | H 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 105R 180N (identity: 100.0 %/100.0 %) | |
| 9 | i | I 1 (A) | non-polymer(CL) | CHLORIDE ION | 106I 107Q 110Q (identity: 100.0 %/100.0 %) | |
| 10 | j | J 1 (A) | non-polymer(S1L) | (4S)-6-chloro-N-(isoquinolin-4-yl)-2-{2-[3-(morpholin-4-yl)anilino]-2-oxoethyl}-1,2,3,4-tetrahydroisoquinoline-4-carboxamide | 41H 49M 140F 141L 142N 144S 145C 163H 164H 165M 166E 187D 189Q (identity: 100.0 %/100.0 %) | |
| 11 | k | K 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 101Y 103F (identity: 100.0 %/100.0 %) | |
| 12 | l | L 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 25T 41H 44C 45T 49M (identity: 100.0 %/100.0 %) | |
| 13 | m | M 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 14 | n | N 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 15 | o | O 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 5K 125V 126Y 127Q (identity: 100.0 %/100.0 %) | |
| 16 | p | P 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 17 | q | Q 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 18 | r | R 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 19 | s | S 1 (B) | non-polymer(S1L) | (4S)-6-chloro-N-(isoquinolin-4-yl)-2-{2-[3-(morpholin-4-yl)anilino]-2-oxoethyl}-1,2,3,4-tetrahydroisoquinoline-4-carboxamide | 305F (identity: 100.0 %/100.0 %) | |
| 20 | t | T 1 (B) | non-polymer(NA) | SODIUM ION | ||
| 21 | u | U 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7gnm_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
7gnm_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTTTSS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :bb bbbbbbbb bddd g l j ll j gdd
Contact : ocff d g l l gg
Contact : f
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
7gnm_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEE GGG EEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact :k k hii i bggbbbbbbbb bbbbbj jj jjjb e b h jeee e
Contact : g m oof jj e j
Contact : o j
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
7gnm_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHS:
ExpBur :bbbbbbbbbbbbbbeeeebbeeeebeeeebbeebeeeebeebeeeebeebeebbeebebebeebbbbbeebbeeebeeeebeebeebebbbbbebbeeeb:
Contact : b bb b bb
Contact : cc
Contact : f
queryA 301:SGVTF: 305
:*****:
7gnm_A_1 301:SGVTF: 305
SecStr : SS :
ExpBur :eeeee:
Contact :b s
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